RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 SLC1A4P43007 532 aa16.83■□□□□ 0.28
LINC00339-208ENST00000634934 KIF23Q02241 960 aaPredicted RBP16.83■□□□□ 0.28
LINC00339-208ENST00000634934 NOGQ13253 232 aa16.83■□□□□ 0.28
LINC00339-208ENST00000634934 ME3Q16798 604 aa16.83■□□□□ 0.28
LINC00339-208ENST00000634934 CCDC96Q2M329 555 aa16.83■□□□□ 0.28
LINC00339-208ENST00000634934 KIAA1755Q5JYT7 1200 aa16.83■□□□□ 0.28
LINC00339-208ENST00000634934 L1TD1Q5T7N2 865 aaKnown RBP16.83■□□□□ 0.28
LINC00339-208ENST00000634934 SPRYD7Q5W111 196 aa16.83■□□□□ 0.28
LINC00339-208ENST00000634934 CTCFLQ8NI51 663 aaPredicted RBP16.83■□□□□ 0.28
LINC00339-208ENST00000634934 ZSCAN31Q96LW9 406 aaPredicted RBP16.83■□□□□ 0.28
LINC00339-208ENST00000634934 SLKQ9H2G2 1235 aaPredicted RBP16.83■□□□□ 0.28
LINC00339-208ENST00000634934 EMILIN3Q9NT22 766 aa16.83■□□□□ 0.28
LINC00339-208ENST00000634934 TMOD4Q9NZQ9 345 aa16.83■□□□□ 0.28
LINC00339-208ENST00000634934 KCNH4Q9UQ05 1017 aa16.83■□□□□ 0.28
LINC00339-208ENST00000634934 MYH4Q9Y623 1939 aa16.82■□□□□ 0.28
LINC00339-208ENST00000634934 FRMPD2Q68DX3 1309 aaPredicted RBP16.82■□□□□ 0.28
LINC00339-208ENST00000634934 PDHBP11177 359 aa16.82■□□□□ 0.28
LINC00339-208ENST00000634934 PTMSP20962 102 aa16.82■□□□□ 0.28
LINC00339-208ENST00000634934 SNAPC2Q13487 334 aa16.82■□□□□ 0.28
LINC00339-208ENST00000634934 RTN1Q16799 776 aa16.82■□□□□ 0.28
LINC00339-208ENST00000634934 NECAB1Q8N987 351 aa16.82■□□□□ 0.28
LINC00339-208ENST00000634934 FANCBQ8NB91 859 aa16.82■□□□□ 0.28
LINC00339-208ENST00000634934 DCAF4Q8WV16 495 aa16.82■□□□□ 0.28
LINC00339-208ENST00000634934 NUP88Q99567 741 aaPredicted RBP16.82■□□□□ 0.28
LINC00339-208ENST00000634934 HPS5Q9UPZ3 1129 aa16.82■□□□□ 0.28
LINC00339-208ENST00000634934 PARP1P09874 1014 aaKnown RBP16.81■□□□□ 0.28
LINC00339-208ENST00000634934 GOLGA8HP0CJ92 632 aa16.81■□□□□ 0.28
LINC00339-208ENST00000634934 ZBTB48P10074 688 aaPredicted RBP16.81■□□□□ 0.28
LINC00339-208ENST00000634934 MAP2K2P36507 400 aa16.81■□□□□ 0.28
LINC00339-208ENST00000634934 GRM4Q14833 912 aa16.81■□□□□ 0.28
LINC00339-208ENST00000634934 GADL1Q6ZQY3 521 aa16.81■□□□□ 0.28
LINC00339-208ENST00000634934 KCTD1Q719H9 257 aa16.81■□□□□ 0.28
LINC00339-208ENST00000634934 LPAR1Q92633 364 aa16.81■□□□□ 0.28
LINC00339-208ENST00000634934 GMCL1Q96IK5 515 aa16.81■□□□□ 0.28
LINC00339-208ENST00000634934 TMX3Q96JJ7 454 aa16.81■□□□□ 0.28
LINC00339-208ENST00000634934 NCOA5Q9HCD5 579 aaKnown RBP16.81■□□□□ 0.28
LINC00339-208ENST00000634934 GPCPD1Q9NPB8 672 aa16.81■□□□□ 0.28
LINC00339-208ENST00000634934 SH2B1Q9NRF2 756 aaPredicted RBP16.81■□□□□ 0.28
LINC00339-208ENST00000634934 A0A0G2JLL6 359 aaPredicted RBP16.8■□□□□ 0.28
LINC00339-208ENST00000634934 K7ELQ4 463 aaPredicted RBP16.8■□□□□ 0.28
LINC00339-208ENST00000634934 PFKFB2O60825 505 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 SNHG28P0DPA3 235 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 BMP3P12645 472 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 KIF5BP33176 963 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 RCAN1P53805 252 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 SH3D19Q5HYK7 790 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 FAM83BQ5T0W9 1011 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 PRRT2Q7Z6L0 340 aaPredicted RBP16.8■□□□□ 0.28
LINC00339-208ENST00000634934 PHIPQ8WWQ0 1821 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 VCAM1P19320 739 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 GTF2A2P52657 109 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 ZNF543Q08ER8 600 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 SCRN1Q12765 414 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 IKQ13123 557 aaPredicted RBP16.8■□□□□ 0.28
LINC00339-208ENST00000634934 ASPRV1Q53RT3 343 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 STAG2Q8N3U4 1231 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 C12orf42Q96LP6 360 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 MAP3K14Q99558 947 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 MAD2L2Q9UI95 211 aa16.8■□□□□ 0.28
LINC00339-208ENST00000634934 CCDC196A0A1B0GTZ2 297 aa16.79■□□□□ 0.28
LINC00339-208ENST00000634934 CPLX1O14810 134 aa16.79■□□□□ 0.28
LINC00339-208ENST00000634934 WDR46O15213 610 aaKnown RBP16.79■□□□□ 0.28
LINC00339-208ENST00000634934 CETPP11597 493 aa16.79■□□□□ 0.28
LINC00339-208ENST00000634934 CDC27P30260 824 aa16.79■□□□□ 0.28
LINC00339-208ENST00000634934 MCM4P33991 863 aa16.79■□□□□ 0.28
LINC00339-208ENST00000634934 ADD1P35611 737 aaKnown RBP16.79■□□□□ 0.28
LINC00339-208ENST00000634934 GPATCH4Q5T3I0 446 aaKnown RBP16.79■□□□□ 0.28
LINC00339-208ENST00000634934 FASTKD5Q7L8L6 764 aaKnown RBP16.79■□□□□ 0.28
LINC00339-208ENST00000634934 CCDC83Q8IWF9 413 aa16.79■□□□□ 0.28
LINC00339-208ENST00000634934 GTF3C6Q969F1 213 aa16.79■□□□□ 0.28
LINC00339-208ENST00000634934 TANGO6Q9C0B7 1094 aa16.79■□□□□ 0.28
LINC00339-208ENST00000634934 RPAP3Q9H6T3 665 aaPredicted RBP16.79■□□□□ 0.28
LINC00339-208ENST00000634934 RBM28Q9NW13 759 aaKnown RBP16.79■□□□□ 0.28
LINC00339-208ENST00000634934 CCL15-CCL14A0A0B4J2E2 113 aa16.78■□□□□ 0.28
LINC00339-208ENST00000634934 PALM3A6NDB9 673 aaPredicted RBP16.78■□□□□ 0.28
LINC00339-208ENST00000634934 DDX11L8A8MPP1 907 aa16.78■□□□□ 0.28
LINC00339-208ENST00000634934 TMEM232C9JQI7 657 aa16.78■□□□□ 0.28
LINC00339-208ENST00000634934 KLRF2D3W0D1 207 aa16.78■□□□□ 0.28
LINC00339-208ENST00000634934 GNAQP50148 359 aa16.78■□□□□ 0.28
LINC00339-208ENST00000634934 PPP2R5BQ15173 497 aa16.78■□□□□ 0.28
LINC00339-208ENST00000634934 CCL15Q16663 113 aa16.78■□□□□ 0.28
LINC00339-208ENST00000634934 TTBK2Q6IQ55 1244 aa16.78■□□□□ 0.28
LINC00339-208ENST00000634934 SAMD1Q6SPF0 538 aaPredicted RBP16.78■□□□□ 0.28
LINC00339-208ENST00000634934 CMTR1Q8N1G2 835 aaKnown RBP16.78■□□□□ 0.28
LINC00339-208ENST00000634934 CCDC82Q8N4S0 544 aa16.78■□□□□ 0.28
LINC00339-208ENST00000634934 PROCA1Q8NCQ7 364 aaPredicted RBP16.78■□□□□ 0.28
LINC00339-208ENST00000634934 FAM217BQ9NTX9 383 aaPredicted RBP16.78■□□□□ 0.28
LINC00339-208ENST00000634934 WBP1LQ9NX94 342 aa16.78■□□□□ 0.28
LINC00339-208ENST00000634934 DHX16O60231 1041 aaKnown RBP16.77■□□□□ 0.28
LINC00339-208ENST00000634934 PLEKHA8P1O95397 391 aa16.77■□□□□ 0.28
LINC00339-208ENST00000634934 HSPA1AP0DMV8 641 aaKnown RBP16.77■□□□□ 0.28
LINC00339-208ENST00000634934 HSPA1BP0DMV9 641 aaKnown RBP16.77■□□□□ 0.28
LINC00339-208ENST00000634934 SLC16A2P36021 539 aa16.77■□□□□ 0.28
LINC00339-208ENST00000634934 TREML2Q5T2D2 321 aa16.77■□□□□ 0.28
LINC00339-208ENST00000634934 MS4A4AQ96JQ5 239 aa16.77■□□□□ 0.28
LINC00339-208ENST00000634934 UBA5Q9GZZ9 404 aa16.77■□□□□ 0.28
LINC00339-208ENST00000634934 CPVLQ9H3G5 476 aa16.77■□□□□ 0.28
LINC00339-208ENST00000634934 NID2Q14112 1375 aa16.77■□□□□ 0.27
LINC00339-208ENST00000634934 PPFIA3O75145 1194 aa16.76■□□□□ 0.27
LINC00339-208ENST00000634934 MAP2K1Q02750 393 aaPredicted RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms