RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	PRDM14	Q9GZV8	571 aa		4.94	□□□□□ -1.62
CNOT1-223	ENST00000628857	CARS2	Q9HA77	564 aa	Known RBP	4.94	□□□□□ -1.62
CNOT1-223	ENST00000628857	DUSP13	Q9UII6	198 aa		4.94	□□□□□ -1.62
CNOT1-223	ENST00000628857	ADAMTS6	Q9UKP5	1117 aa		4.94	□□□□□ -1.62
CNOT1-223	ENST00000628857	PCDHB12	Q9Y5F1	795 aa		4.94	□□□□□ -1.62
CNOT1-223	ENST00000628857	TTBK1	Q5TCY1	1321 aa	Predicted RBP	4.94	□□□□□ -1.62
CNOT1-223	ENST00000628857		A0A1W2PQH9	124 aa		4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	FGR	P09769	529 aa		4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	TAL1	P17542	331 aa	Predicted RBP	4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	AFM	P43652	599 aa		4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	ZNF143	P52747	638 aa	Predicted RBP	4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	CCDC81	Q6ZN84	652 aa		4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	CREG2	Q8IUH2	290 aa		4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	USHBP1	Q8N6Y0	703 aa		4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	ASIC4	Q96FT7	647 aa		4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	MKRN2	Q9H000	416 aa	Known RBP	4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	RC3H2	Q9HBD1	1191 aa	Known RBP	4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	CTNND2	Q9UQB3	1225 aa		4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	LTBP3	Q9NS15	1303 aa		4.93	□□□□□ -1.62
CNOT1-223	ENST00000628857	SHISA3	A0PJX4	238 aa		4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857		C9IYK1	514 aa		4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	SSB	P05455	408 aa	Known RBP eCLIP	4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	TCEAL1	Q15170	157 aa		4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	NR0B2	Q15466	257 aa		4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	ZYX	Q15942	572 aa	Known RBP	4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	RUFY4	Q6ZNE9	571 aa		4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	CCDC144CP	Q8IYA2	1237 aa		4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	LRRN4CL	Q8ND94	238 aa		4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	SYTL4	Q96C24	671 aa	Predicted RBP	4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	TCTN2	Q96GX1	697 aa		4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	CHST7	Q9NS84	486 aa		4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	TMEM59L	Q9UK28	342 aa		4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	DIS3	Q9Y2L1	958 aa	Known RBP	4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	FHOD1	Q9Y613	1164 aa		4.92	□□□□□ -1.62
CNOT1-223	ENST00000628857	SHOX	O15266	292 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	GSN	P06396	782 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	CD247	P20963	164 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	BMP8B	P34820	402 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	PCBP3	P57721	371 aa	Known RBP	4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	RBM10	P98175	930 aa	Known RBP	4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	SLC7A5	Q01650	507 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	TEK	Q02763	1124 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	EGR3	Q06889	387 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	NCAPH	Q15003	741 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	SNX17	Q15036	470 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	TMC3	Q7Z5M5	1100 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	SPPL2C	Q8IUH8	684 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	PDZD8	Q8NEN9	1154 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	FMNL2	Q96PY5	1086 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	4.91	□□□□□ -1.62	3e-8	■□□□□ 11.3
CNOT1-223	ENST00000628857	GP6	Q9HCN6	339 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	PRKAG3	Q9UGI9	489 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	FBXL21	Q9UKT6	434 aa		4.91	□□□□□ -1.62
CNOT1-223	ENST00000628857	WASH4P	A8MWX3	477 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	PAX4	O43316	350 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	PAPLN	O95428	1278 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	PRAMEF1	O95521	474 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	HPX	P02790	462 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	ZGLP1	P0C6A0	271 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	RAC2	P15153	192 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	LTK	P29376	864 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	CHRNE	Q04844	493 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	DUSP4	Q13115	394 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	AXDND1	Q5T1B0	1012 aa	Predicted RBP	4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	PPFIBP1	Q86W92	1011 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	LILRA2	Q8N149	483 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	OXR1	Q8N573	874 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	FAM169B	Q8N8A8	192 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	LINC01599	Q8WXQ3	324 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	ARMC5	Q96C12	935 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	RCC1L	Q96I51	464 aa	Known RBP	4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	C19orf73	Q9NVV2	129 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	WHRN	Q9P202	907 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	PCDHA11	Q9Y5I1	949 aa		4.9	□□□□□ -1.63
CNOT1-223	ENST00000628857	CBFA2T2	O43439	604 aa		4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	NAT2	P11245	290 aa		4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	ITGA4	P13612	1032 aa		4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	KIR2DL1	P43626	348 aa	Predicted RBP	4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	KIR2DL2	P43627	348 aa	Predicted RBP	4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	NOP2	P46087	812 aa	Known RBP	4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	SNW1	Q13573	536 aa	Known RBP	4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	GNPTAB	Q3T906	1256 aa		4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	MCF2L2	Q86YR7	1114 aa		4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	ANKS4B	Q8N8V4	417 aa		4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	KLHL6	Q8WZ60	621 aa		4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	ZNF512B	Q96KM6	892 aa	Predicted RBP	4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	ADAMTS10	Q9H324	1103 aa		4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	FAM53C	Q9NYF3	392 aa		4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	TCFL5	Q9UL49	500 aa		4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	SF3B6	Q9Y3B4	125 aa	Known RBP	4.89	□□□□□ -1.63
CNOT1-223	ENST00000628857	DNAJC25-GNG10	A0A024R161	153 aa		4.88	□□□□□ -1.63
CNOT1-223	ENST00000628857	SSU72P8	A0A1W2PR75	194 aa		4.88	□□□□□ -1.63
CNOT1-223	ENST00000628857	FITM1	A5D6W6	292 aa		4.88	□□□□□ -1.63
CNOT1-223	ENST00000628857	ANKRD34B	A5PLL1	514 aa		4.88	□□□□□ -1.63
CNOT1-223	ENST00000628857	PPM1B	O75688	479 aa		4.88	□□□□□ -1.63
CNOT1-223	ENST00000628857	ZNF205	O95201	554 aa		4.88	□□□□□ -1.63
CNOT1-223	ENST00000628857	ZNF445	P59923	1031 aa		4.88	□□□□□ -1.63
CNOT1-223	ENST00000628857	PPP2R5E	Q16537	467 aa		4.88	□□□□□ -1.63
CNOT1-223	ENST00000628857	NAALADL2	Q58DX5	795 aa		4.88	□□□□□ -1.63
CNOT1-223	ENST00000628857	NOL9	Q5SY16	702 aa	Known RBP	4.88	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms