RNA–Protein interactions for RNA: ENST00000621783.4

CPNE3-212, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 817 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-212ENST00000621783 POTEIP0CG38 1075 aa12.35□□□□□ -0.43
CPNE3-212ENST00000621783 POTEJP0CG39 1038 aa12.35□□□□□ -0.43
CPNE3-212ENST00000621783 PKN1Q16512 942 aa12.35□□□□□ -0.43
CPNE3-212ENST00000621783 KCTD1Q719H9 257 aa12.35□□□□□ -0.43
CPNE3-212ENST00000621783 KLRG1Q96E93 195 aa12.35□□□□□ -0.43
CPNE3-212ENST00000621783 SPZ1Q9BXG8 430 aa12.35□□□□□ -0.43
CPNE3-212ENST00000621783 CPVLQ9H3G5 476 aa12.35□□□□□ -0.43
CPNE3-212ENST00000621783 SH2D4AQ9H788 454 aa12.35□□□□□ -0.43
CPNE3-212ENST00000621783 GPCPD1Q9NPB8 672 aa12.35□□□□□ -0.43
CPNE3-212ENST00000621783 GJB4Q9NTQ9 266 aa12.35□□□□□ -0.43
CPNE3-212ENST00000621783 RBM27Q9P2N5 1060 aaKnown RBP12.35□□□□□ -0.43
CPNE3-212ENST00000621783 TMX2Q9Y320 296 aa12.35□□□□□ -0.43
CPNE3-212ENST00000621783 PHIPQ8WWQ0 1821 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 F5H6K3 240 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 KLRC3Q07444 240 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 RESTQ13127 1097 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 PRKG1Q13976 671 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 NOL9Q5SY16 702 aaKnown RBP12.34□□□□□ -0.43
CPNE3-212ENST00000621783 GPATCH4Q5T3I0 446 aaKnown RBP12.34□□□□□ -0.43
CPNE3-212ENST00000621783 OTUD7BQ6GQQ9 843 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 FERMT3Q86UX7 667 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 RGS22Q8NE09 1264 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 FBXO18Q8NFZ0 1043 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.34□□□□□ -0.43
CPNE3-212ENST00000621783 PIBF1Q8WXW3 757 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 GMCL1Q96IK5 515 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 FEZ1Q99689 392 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 RRAGCQ9HB90 399 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 GOPCQ9HD26 462 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 CLEC11AQ9Y240 323 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 V9GY48 417 aaPredicted RBP12.34□□□□□ -0.43
CPNE3-212ENST00000621783 MYH15Q9Y2K3 1946 aa12.34□□□□□ -0.43
CPNE3-212ENST00000621783 USP2O75604 605 aaPredicted RBP12.33□□□□□ -0.44
CPNE3-212ENST00000621783 ATXN8OSP0DMR3 200 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 SCG2P13521 617 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 VEGFAP15692 232 aaPredicted RBP12.33□□□□□ -0.44
CPNE3-212ENST00000621783 SMARCA1P28370 1054 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 NF2P35240 595 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 SLC1A4P43007 532 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 TRIM29Q14134 588 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 PFKFB3Q16875 520 aaPredicted RBP12.33□□□□□ -0.44
CPNE3-212ENST00000621783 KIAA1755Q5JYT7 1200 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 KRT40Q6A162 431 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 TTBK2Q6IQ55 1244 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 CLEC17AQ6ZS10 378 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 ZKSCAN4Q969J2 545 aaPredicted RBP12.33□□□□□ -0.44
CPNE3-212ENST00000621783 SHISA4Q96DD7 197 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 CHAMP1Q96JM3 812 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 GBP4Q96PP9 640 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 NUP88Q99567 741 aaPredicted RBP12.33□□□□□ -0.44
CPNE3-212ENST00000621783 UBA5Q9GZZ9 404 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 RIOX1Q9H6W3 641 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 VCPKMTQ9H867 229 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 PICK1Q9NRD5 415 aa12.33□□□□□ -0.44
CPNE3-212ENST00000621783 ISY1Q9ULR0 285 aaKnown RBP12.33□□□□□ -0.44
CPNE3-212ENST00000621783 PPP1R12BO60237 982 aaPredicted RBP12.32□□□□□ -0.44
CPNE3-212ENST00000621783 BAG4O95429 457 aaKnown RBP12.32□□□□□ -0.44
CPNE3-212ENST00000621783 BMP3P12645 472 aa12.32□□□□□ -0.44
CPNE3-212ENST00000621783 ZYXQ15942 572 aaKnown RBP12.32□□□□□ -0.44
CPNE3-212ENST00000621783 MAP1SQ66K74 1059 aaPredicted RBP12.32□□□□□ -0.44
CPNE3-212ENST00000621783 LDHDQ86WU2 507 aa12.32□□□□□ -0.44
CPNE3-212ENST00000621783 SPICE1Q8N0Z3 855 aa12.32□□□□□ -0.44
CPNE3-212ENST00000621783 RRP36Q96EU6 259 aaKnown RBP12.32□□□□□ -0.44
CPNE3-212ENST00000621783 AS3MTQ9HBK9 375 aa12.32□□□□□ -0.44
CPNE3-212ENST00000621783 NMRK2Q9NPI5 230 aa12.32□□□□□ -0.44
CPNE3-212ENST00000621783 VPS54Q9P1Q0 977 aa12.32□□□□□ -0.44
CPNE3-212ENST00000621783 SNCAIPQ9Y6H5 919 aa12.32□□□□□ -0.44
CPNE3-212ENST00000621783 KIF28PB7ZC32 967 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 MMP1P03956 469 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 XBP1P17861 261 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 PTPRAP18433 802 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 SLC16A2P36021 539 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 IREB2P48200 963 aaKnown RBP12.31□□□□□ -0.44
CPNE3-212ENST00000621783 MAP3K9P80192 1104 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 KIF23Q02241 960 aaPredicted RBP12.31□□□□□ -0.44
CPNE3-212ENST00000621783 VGLL4Q14135 290 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 NFKBIBQ15653 356 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 FOXD4L6Q3SYB3 417 aaPredicted RBP12.31□□□□□ -0.44
CPNE3-212ENST00000621783 FAM83BQ5T0W9 1011 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 MCTP1Q6DN14 999 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 FOXD4L3Q6VB84 417 aaPredicted RBP12.31□□□□□ -0.44
CPNE3-212ENST00000621783 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.31□□□□□ -0.44
CPNE3-212ENST00000621783 HOMER1Q86YM7 354 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 ADGRF4Q8IZF3 695 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 ZNF526Q8TF50 670 aaPredicted RBP12.31□□□□□ -0.44
CPNE3-212ENST00000621783 GPKOWQ92917 476 aaPredicted RBP eCLIP12.31□□□□□ -0.44
CPNE3-212ENST00000621783 PIGSQ96S52 555 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 WDR18Q9BV38 432 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 KIAA1683Q9H0B3 1180 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 ZSCAN16Q9H4T2 348 aaPredicted RBP12.31□□□□□ -0.44
CPNE3-212ENST00000621783 VAT1LQ9HCJ6 419 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 SEC63Q9UGP8 760 aaKnown RBP12.31□□□□□ -0.44
CPNE3-212ENST00000621783 KCNJ14Q9UNX9 436 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 ATP6V1DQ9Y5K8 247 aa12.31□□□□□ -0.44
CPNE3-212ENST00000621783 USP17L10C9JJH3 530 aa12.3□□□□□ -0.44
CPNE3-212ENST00000621783 TRAF5O00463 557 aa12.3□□□□□ -0.44
CPNE3-212ENST00000621783 MTMR2Q13614 643 aa12.3□□□□□ -0.44
CPNE3-212ENST00000621783 TTLL12Q14166 644 aaPredicted RBP12.3□□□□□ -0.44
CPNE3-212ENST00000621783 SYDE2Q5VT97 1194 aa12.3□□□□□ -0.44
CPNE3-212ENST00000621783 WWC2Q6AWC2 1192 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms