RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ASNSP08243 561 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 EPHX2P34913 555 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 KLRC3Q07444 240 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 TMEM87AQ8NBN3 555 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 UBA5Q9GZZ9 404 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 GDPD2Q9HCC8 539 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 VPS54Q9P1Q0 977 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 TMX2Q9Y320 296 aa16.5■□□□□ 0.23
USP39-220ENST00000613444 NDUFB10O96000 172 aa16.49■□□□□ 0.23
USP39-220ENST00000613444 U2AF2P26368 475 aaKnown RBP eCLIP16.49■□□□□ 0.23
USP39-220ENST00000613444 TRIM29Q14134 588 aa16.49■□□□□ 0.23
USP39-220ENST00000613444 NPY5RQ15761 445 aa16.49■□□□□ 0.23
USP39-220ENST00000613444 GPATCH4Q5T3I0 446 aaKnown RBP16.49■□□□□ 0.23
USP39-220ENST00000613444 DCAF15Q66K64 600 aa16.49■□□□□ 0.23
USP39-220ENST00000613444 SLFN13Q68D06 897 aa16.49■□□□□ 0.23
USP39-220ENST00000613444 TTBK2Q6IQ55 1244 aa16.49■□□□□ 0.23
USP39-220ENST00000613444 DCAF4Q8WV16 495 aa16.49■□□□□ 0.23
USP39-220ENST00000613444 GMCL1Q96IK5 515 aa16.49■□□□□ 0.23
USP39-220ENST00000613444 PHF20Q9BVI0 1012 aa16.49■□□□□ 0.23
USP39-220ENST00000613444 GOLGA6L22H0YM25 854 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 CTNND1O60716 968 aaKnown RBP16.48■□□□□ 0.23
USP39-220ENST00000613444 INPP5BP32019 993 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 KIAA1755Q5JYT7 1200 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 DLK2Q6UY11 383 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 PIBF1Q8WXW3 757 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 ZNF341Q9BYN7 854 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 GPCPD1Q9NPB8 672 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 PRPF40AO75400 957 aaKnown RBP16.48■□□□□ 0.23
USP39-220ENST00000613444 KCTD1Q719H9 257 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 CCDC84Q86UT8 332 aaPredicted RBP16.48■□□□□ 0.23
USP39-220ENST00000613444 HOOK2Q96ED9 719 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 GLIS2Q9BZE0 524 aaPredicted RBP16.48■□□□□ 0.23
USP39-220ENST00000613444 TAF1DQ9H5J8 278 aaPredicted RBP16.48■□□□□ 0.23
USP39-220ENST00000613444 ARHGEF10LQ9HCE6 1279 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 GINM1Q9NU53 330 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 FZD1Q9UP38 647 aa16.48■□□□□ 0.23
USP39-220ENST00000613444 SLC1A4P43007 532 aa16.47■□□□□ 0.23
USP39-220ENST00000613444 TYW1BQ6NUM6 668 aa16.47■□□□□ 0.23
USP39-220ENST00000613444 BRAPQ7Z569 592 aa16.47■□□□□ 0.23
USP39-220ENST00000613444 USP48Q86UV5 1035 aa16.47■□□□□ 0.23
USP39-220ENST00000613444 ZC3H15Q8WU90 426 aaKnown RBP16.47■□□□□ 0.23
USP39-220ENST00000613444 DCPSQ96C86 337 aaKnown RBP16.47■□□□□ 0.23
USP39-220ENST00000613444 OTOFQ9HC10 1997 aa16.47■□□□□ 0.23
USP39-220ENST00000613444 BTBD18B2RXH4 712 aa16.47■□□□□ 0.23
USP39-220ENST00000613444 ADM5C9JUS6 153 aa16.47■□□□□ 0.23
USP39-220ENST00000613444 KRT85P78386 507 aa16.47■□□□□ 0.23
USP39-220ENST00000613444 WWC2Q6AWC2 1192 aa16.47■□□□□ 0.23
USP39-220ENST00000613444 DIS3L2Q8IYB7 885 aaKnown RBP16.47■□□□□ 0.23
USP39-220ENST00000613444 MTMR8Q96EF0 704 aa16.47■□□□□ 0.23
USP39-220ENST00000613444 CCDC96Q2M329 555 aa16.46■□□□□ 0.23
USP39-220ENST00000613444 OXER1Q8TDS5 423 aa16.46■□□□□ 0.23
USP39-220ENST00000613444 GPKOWQ92917 476 aaPredicted RBP eCLIP16.46■□□□□ 0.23
USP39-220ENST00000613444 KLRG1Q96E93 195 aa16.46■□□□□ 0.23
USP39-220ENST00000613444 PIGSQ96S52 555 aa16.46■□□□□ 0.23
USP39-220ENST00000613444 JMJD4Q9H9V9 463 aa16.46■□□□□ 0.23
USP39-220ENST00000613444 SH3GLB2Q9NR46 395 aa16.46■□□□□ 0.23
USP39-220ENST00000613444 TFIP11Q9UBB9 837 aaKnown RBP16.46■□□□□ 0.23
USP39-220ENST00000613444 FIBPO43427 364 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 XBP1P17861 261 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 SLC16A2P36021 539 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 SUPT20HL1Q3ZLR7 823 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 MYSM1Q5VVJ2 828 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 SULF1Q8IWU6 871 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 ADGRF4Q8IZF3 695 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 NUP88Q99567 741 aaPredicted RBP16.45■□□□□ 0.22
USP39-220ENST00000613444 FOXP1Q9H334 677 aaPredicted RBP16.45■□□□□ 0.22
USP39-220ENST00000613444 VAT1LQ9HCJ6 419 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 BARHL2Q9NY43 387 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 IQCA1LA6NCM1 817 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 STXBP3O00186 592 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 ADAMTS3O15072 1205 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 NCLP19338 710 aaKnown RBP16.45■□□□□ 0.22
USP39-220ENST00000613444 NR5A1Q13285 461 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 RRP36Q96EU6 259 aaKnown RBP16.45■□□□□ 0.22
USP39-220ENST00000613444 USP28Q96RU2 1077 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 WRNIP1Q96S55 665 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 ANP32EQ9BTT0 268 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 FTOQ9C0B1 505 aaKnown RBP eCLIP16.45■□□□□ 0.22
USP39-220ENST00000613444 VCPKMTQ9H867 229 aa16.45■□□□□ 0.22
USP39-220ENST00000613444 USP2O75604 605 aaPredicted RBP16.44■□□□□ 0.22
USP39-220ENST00000613444 PTMSP20962 102 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 ATL3Q6DD88 541 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 KRT26Q7Z3Y9 468 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 HOMER1Q86YM7 354 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 NOSTRINQ8IVI9 506 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 SCYL3Q8IZE3 742 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 SPICE1Q8N0Z3 855 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 TNFRSF25Q93038 417 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 ZKSCAN4Q969J2 545 aaPredicted RBP16.44■□□□□ 0.22
USP39-220ENST00000613444 RAD21O60216 631 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 TRAK2O60296 914 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 GADD45BO75293 160 aaPredicted RBP16.44■□□□□ 0.22
USP39-220ENST00000613444 BMP3P12645 472 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 SAFBQ15424 915 aaKnown RBP eCLIP16.44■□□□□ 0.22
USP39-220ENST00000613444 BTNL9Q6UXG8 535 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.44■□□□□ 0.223e-6■□□□□ 9.8
USP39-220ENST00000613444 GOPCQ9HD26 462 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 SMCHD1A6NHR9 2005 aa16.44■□□□□ 0.22
USP39-220ENST00000613444 ELP1O95163 1332 aa16.43■□□□□ 0.22
USP39-220ENST00000613444 USP17L10C9JJH3 530 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms