RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 PKN1Q16512 942 aa16.75■□□□□ 0.27
CDH1-213ENST00000612417 SPECC1Q5M775 1068 aa16.75■□□□□ 0.27
CDH1-213ENST00000612417 CC2D2BQ6DHV5 1058 aa16.75■□□□□ 0.27
CDH1-213ENST00000612417 CMTR1Q8N1G2 835 aaKnown RBP16.75■□□□□ 0.27
CDH1-213ENST00000612417 ENOX1Q8TC92 643 aaKnown RBP16.75■□□□□ 0.27
CDH1-213ENST00000612417 OXER1Q8TDS5 423 aa16.75■□□□□ 0.27
CDH1-213ENST00000612417 RBM28Q9NW13 759 aaKnown RBP16.75■□□□□ 0.27
CDH1-213ENST00000612417 SAP30BPQ9UHR5 308 aaKnown RBP16.75■□□□□ 0.27
CDH1-213ENST00000612417 ATF5Q9Y2D1 282 aaPredicted RBP16.75■□□□□ 0.27
CDH1-213ENST00000612417 SUGT1Q9Y2Z0 365 aa16.75■□□□□ 0.27
CDH1-213ENST00000612417 PRPF3O43395 683 aaKnown RBP16.74■□□□□ 0.27
CDH1-213ENST00000612417 SLU7O95391 586 aaKnown RBP16.74■□□□□ 0.27
CDH1-213ENST00000612417 DPEP1P16444 411 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 CCDC82Q8N4S0 544 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 CERS5Q8N5B7 392 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 SMARCE1Q969G3 411 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 SHISA4Q96DD7 197 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 FAM163AQ96GL9 167 aaPredicted RBP16.74■□□□□ 0.27
CDH1-213ENST00000612417 PHF20Q9BVI0 1012 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 KCNQ5Q9NR82 932 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 INTS13Q9NVM9 706 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 SERTAD1Q9UHV2 236 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 NAV1Q8NEY1 1877 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 CDK5RAP2Q96SN8 1893 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 ECE2O60344 883 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 CALM1P0DP23 149 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 CALM2P0DP24 149 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 CALM3P0DP25 149 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 TOP1P11387 765 aaKnown RBP16.74■□□□□ 0.27
CDH1-213ENST00000612417 AKAP17AQ02040 695 aaKnown RBP16.74■□□□□ 0.27
CDH1-213ENST00000612417 NAA30Q147X3 362 aaPredicted RBP16.74■□□□□ 0.27
CDH1-213ENST00000612417 AOC3Q16853 763 aa16.74■□□□□ 0.27
CDH1-213ENST00000612417 CT47A1Q5JQC4 288 aaPredicted RBP16.74■□□□□ 0.27
CDH1-213ENST00000612417 GAKO14976 1311 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 BMP15O95972 392 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 PRR29P0C7W0 189 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 SCNN1DP51172 638 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 TBX2Q13207 712 aaPredicted RBP16.73■□□□□ 0.27
CDH1-213ENST00000612417 CCDC93Q567U6 631 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 C12orf60Q5U649 245 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 CATIPQ7Z7H3 387 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 IQCA1Q86XH1 822 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 SUPT20HQ8NEM7 779 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 CABP5Q9NP86 173 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 MKRN1Q9UHC7 482 aaKnown RBP16.73■□□□□ 0.27
CDH1-213ENST00000612417 DAGLAQ9Y4D2 1042 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 PHLPP2Q6ZVD8 1323 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 TRIM75PA6NK02 468 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 DDAH1O94760 285 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 KRT2P35908 639 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 IFIT1BQ5T764 474 aaKnown RBP16.73■□□□□ 0.27
CDH1-213ENST00000612417 CSRNP2Q9H175 543 aa16.73■□□□□ 0.27
CDH1-213ENST00000612417 TMEM232C9JQI7 657 aa16.72■□□□□ 0.27
CDH1-213ENST00000612417 ORC4O43929 436 aa16.72■□□□□ 0.27
CDH1-213ENST00000612417 POLD1P28340 1107 aa16.72■□□□□ 0.27
CDH1-213ENST00000612417 ERCC5P28715 1186 aaPredicted RBP16.72■□□□□ 0.27
CDH1-213ENST00000612417 ETF1P62495 437 aaKnown RBP16.72■□□□□ 0.27
CDH1-213ENST00000612417 TROAPQ12815 778 aa16.72■□□□□ 0.27
CDH1-213ENST00000612417 FAM47AQ5JRC9 791 aa16.72■□□□□ 0.27
CDH1-213ENST00000612417 TMEM139Q8IV31 216 aa16.72■□□□□ 0.27
CDH1-213ENST00000612417 ZNF397Q8NF99 534 aaPredicted RBP16.72■□□□□ 0.27
CDH1-213ENST00000612417 DYNLL2Q96FJ2 89 aa16.72■□□□□ 0.27
CDH1-213ENST00000612417 CCDC34Q96HJ3 373 aa16.72■□□□□ 0.27
CDH1-213ENST00000612417 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.72■□□□□ 0.27
CDH1-213ENST00000612417 NFE2L3Q9Y4A8 694 aa16.72■□□□□ 0.27
CDH1-213ENST00000612417 PPIP5K2O43314 1243 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 RHBDL3P58872 404 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 CBX1P83916 185 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 FMR1Q06787 632 aaKnown RBP eCLIP16.71■□□□□ 0.27
CDH1-213ENST00000612417 FERMT2Q96AC1 680 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 MKNK2Q9HBH9 465 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 OGFRQ9NZT2 677 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 MYH1P12882 1939 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 TSPY2A6NKD2 308 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 ARHGAP6O43182 974 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 PLCD1P51178 756 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 SYT10Q6XYQ8 523 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 TNFRSF25Q93038 417 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 TEKT1Q969V4 418 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 VPS54Q9P1Q0 977 aa16.71■□□□□ 0.27
CDH1-213ENST00000612417 PPP1R1BQ9UD71 204 aaPredicted RBP16.71■□□□□ 0.27
CDH1-213ENST00000612417 SCN9AQ15858 1988 aa16.7■□□□□ 0.26
CDH1-213ENST00000612417 USP17L3A6NCW0 530 aa16.7■□□□□ 0.26
CDH1-213ENST00000612417 USP17L4A6NCW7 530 aa16.7■□□□□ 0.26
CDH1-213ENST00000612417 STRIP1Q5VSL9 837 aa16.7■□□□□ 0.26
CDH1-213ENST00000612417 TMTC3Q6ZXV5 915 aa16.7■□□□□ 0.26
CDH1-213ENST00000612417 USP49Q70CQ1 688 aa16.7■□□□□ 0.26
CDH1-213ENST00000612417 USP17L1Q7RTZ2 530 aa16.7■□□□□ 0.26
CDH1-213ENST00000612417 SH3RF1Q7Z6J0 888 aa16.7■□□□□ 0.26
CDH1-213ENST00000612417 RTKN2Q8IZC4 609 aa16.7■□□□□ 0.26
CDH1-213ENST00000612417 DDX41Q9UJV9 622 aaKnown RBP16.7■□□□□ 0.26
CDH1-213ENST00000612417 FLT1P17948 1338 aa16.7■□□□□ 0.26
CDH1-213ENST00000612417 PLEKHA8P1O95397 391 aa16.69■□□□□ 0.26
CDH1-213ENST00000612417 SLFN14P0C7P3 912 aa16.69■□□□□ 0.26
CDH1-213ENST00000612417 ZSCAN20P17040 1043 aaPredicted RBP16.69■□□□□ 0.26
CDH1-213ENST00000612417 KCNA3P22001 575 aa16.69■□□□□ 0.26
CDH1-213ENST00000612417 PICALMQ13492 652 aa16.69■□□□□ 0.26
CDH1-213ENST00000612417 R3HDM1Q15032 1099 aaKnown RBP16.69■□□□□ 0.26
CDH1-213ENST00000612417 NPY5RQ15761 445 aa16.69■□□□□ 0.26
CDH1-213ENST00000612417 GRIPAP1Q4V328 841 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms