RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 LARGE1O95461 756 aa16.73■□□□□ 0.27
UPF1-211ENST00000600868 SLC10A3P09131 477 aa16.73■□□□□ 0.27
UPF1-211ENST00000600868 BMP3P12645 472 aa16.73■□□□□ 0.27
UPF1-211ENST00000600868 RXRAP19793 462 aa16.73■□□□□ 0.27
UPF1-211ENST00000600868 GNAQP50148 359 aa16.73■□□□□ 0.27
UPF1-211ENST00000600868 GPATCH4Q5T3I0 446 aaKnown RBP16.73■□□□□ 0.27
UPF1-211ENST00000600868 FASTKD5Q7L8L6 764 aaKnown RBP16.73■□□□□ 0.27
UPF1-211ENST00000600868 RAB11FIP4Q86YS3 637 aa16.73■□□□□ 0.27
UPF1-211ENST00000600868 SPICE1Q8N0Z3 855 aa16.73■□□□□ 0.27
UPF1-211ENST00000600868 PROCA1Q8NCQ7 364 aaPredicted RBP16.73■□□□□ 0.27
UPF1-211ENST00000600868 CHMP4CQ96CF2 233 aa16.73■□□□□ 0.27
UPF1-211ENST00000600868 MS4A4AQ96JQ5 239 aa16.73■□□□□ 0.27
UPF1-211ENST00000600868 FAM217BQ9NTX9 383 aaPredicted RBP16.73■□□□□ 0.27
UPF1-211ENST00000600868 MTMR7Q9Y216 660 aa16.73■□□□□ 0.27
UPF1-211ENST00000600868 RASSF10A6NK89 507 aa16.72■□□□□ 0.27
UPF1-211ENST00000600868 PLA2G6O60733 806 aa16.72■□□□□ 0.27
UPF1-211ENST00000600868 VCAM1P19320 739 aa16.72■□□□□ 0.27
UPF1-211ENST00000600868 ANP32AP39687 249 aaKnown RBP16.72■□□□□ 0.27
UPF1-211ENST00000600868 CCT2P78371 535 aaKnown RBP16.72■□□□□ 0.27
UPF1-211ENST00000600868 SCRN1Q12765 414 aa16.72■□□□□ 0.27
UPF1-211ENST00000600868 STK3Q13188 491 aa16.72■□□□□ 0.27
UPF1-211ENST00000600868 CCDC96Q2M329 555 aa16.72■□□□□ 0.27
UPF1-211ENST00000600868 CCDC144CPQ8IYA2 1237 aa16.72■□□□□ 0.27
UPF1-211ENST00000600868 GTF3C6Q969F1 213 aa16.72■□□□□ 0.27
UPF1-211ENST00000600868 LZTS2Q9BRK4 669 aa16.72■□□□□ 0.27
UPF1-211ENST00000600868 LOC285556D6RIA3 1793 aa16.72■□□□□ 0.27
UPF1-211ENST00000600868 FAM155AB1AL88 458 aaPredicted RBP16.71■□□□□ 0.27
UPF1-211ENST00000600868 DHX16O60231 1041 aaKnown RBP16.71■□□□□ 0.27
UPF1-211ENST00000600868 CETPP11597 493 aa16.71■□□□□ 0.27
UPF1-211ENST00000600868 CDC27P30260 824 aa16.71■□□□□ 0.27
UPF1-211ENST00000600868 ADD1P35611 737 aaKnown RBP16.71■□□□□ 0.27
UPF1-211ENST00000600868 DGKZQ13574 1117 aa16.71■□□□□ 0.27
UPF1-211ENST00000600868 MOGSQ13724 837 aa16.71■□□□□ 0.27
UPF1-211ENST00000600868 BECN1Q14457 450 aa16.71■□□□□ 0.27
UPF1-211ENST00000600868 DEFB115Q30KQ5 88 aa16.71■□□□□ 0.27
UPF1-211ENST00000600868 FAM83BQ5T0W9 1011 aa16.71■□□□□ 0.27
UPF1-211ENST00000600868 KCTD1Q719H9 257 aa16.71■□□□□ 0.27
UPF1-211ENST00000600868 RASGRP2Q7LDG7 609 aa16.71■□□□□ 0.27
UPF1-211ENST00000600868 STAG2Q8N3U4 1231 aa16.71■□□□□ 0.27
UPF1-211ENST00000600868 NECAB1Q8N987 351 aa16.71■□□□□ 0.27
UPF1-211ENST00000600868 NUP88Q99567 741 aaPredicted RBP16.71■□□□□ 0.27
UPF1-211ENST00000600868 NCOA5Q9HCD5 579 aaKnown RBP16.71■□□□□ 0.27
UPF1-211ENST00000600868 FRMPD2Q68DX3 1309 aaPredicted RBP16.7■□□□□ 0.26
UPF1-211ENST00000600868 TESPA1A2RU30 521 aaPredicted RBP16.7■□□□□ 0.26
UPF1-211ENST00000600868 SMARCA1P28370 1054 aa16.7■□□□□ 0.26
UPF1-211ENST00000600868 ST3GAL1Q11201 340 aa16.7■□□□□ 0.26
UPF1-211ENST00000600868 MKRN3Q13064 507 aaKnown RBP16.7■□□□□ 0.26
UPF1-211ENST00000600868 CUL4AQ13619 759 aa16.7■□□□□ 0.26
UPF1-211ENST00000600868 BTNL9Q6UXG8 535 aa16.7■□□□□ 0.26
UPF1-211ENST00000600868 TMTC3Q6ZXV5 915 aa16.7■□□□□ 0.26
UPF1-211ENST00000600868 RPAP3Q9H6T3 665 aaPredicted RBP16.7■□□□□ 0.26
UPF1-211ENST00000600868 GPCPD1Q9NPB8 672 aa16.7■□□□□ 0.26
UPF1-211ENST00000600868 CCL15-CCL14A0A0B4J2E2 113 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 MANSC4A6NHS7 340 aaPredicted RBP16.69■□□□□ 0.26
UPF1-211ENST00000600868 USP17L15C9J2P7 530 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 USP17L13C9JLJ4 530 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 TMEM232C9JQI7 657 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 USP17L11C9JVI0 530 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 KLRF2D3W0D1 207 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 USP17L18D6R9N7 530 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 USP17L22D6RA61 530 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 USP17L17D6RBQ6 530 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 USP17L19D6RCP7 530 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 USP17L20D6RJB6 530 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 GOLGA8HP0CJ92 632 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 HOXA7P31268 230 aaPredicted RBP16.69■□□□□ 0.26
UPF1-211ENST00000600868 USP17L24Q0WX57 530 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 NTRK3Q16288 839 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 CCL15Q16663 113 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 CPLX2Q6PUV4 134 aaKnown RBP16.69■□□□□ 0.26
UPF1-211ENST00000600868 GADL1Q6ZQY3 521 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 FAM160B2Q86V87 743 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 CHURC1Q8WUH1 139 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 LLPHQ9BRT6 129 aaKnown RBP16.69■□□□□ 0.26
UPF1-211ENST00000600868 FEM1BQ9UK73 627 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 AGTPBP1Q9UPW5 1226 aa16.69■□□□□ 0.26
UPF1-211ENST00000600868 CPLX1O14810 134 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 CDKL5O76039 1030 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 PLEKHA8P1O95397 391 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 IFNAR1P17181 557 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 STAT2P52630 851 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 INHBEP58166 350 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 FUT2Q10981 343 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 PABPC4Q13310 644 aaKnown RBP eCLIP16.68■□□□□ 0.26
UPF1-211ENST00000600868 TREML2Q5T2D2 321 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 TTBK2Q6IQ55 1244 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 CYP4F22Q6NT55 531 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 GPAT2Q6NUI2 795 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 CATSPERGQ6ZRH7 1159 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 CCDC83Q8IWF9 413 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 SRBD1Q8N5C6 995 aaKnown RBP16.68■□□□□ 0.26
UPF1-211ENST00000600868 BRI3BPQ8WY22 251 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 SPZ1Q9BXG8 430 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 RIOX1Q9H6W3 641 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 ISY1Q9ULR0 285 aaKnown RBP16.68■□□□□ 0.26
UPF1-211ENST00000600868 SLC45A1Q9Y2W3 748 aa16.68■□□□□ 0.26
UPF1-211ENST00000600868 C1QTNF8P60827 252 aa16.67■□□□□ 0.26
UPF1-211ENST00000600868 PAXIP1Q6ZW49 1069 aaPredicted RBP16.67■□□□□ 0.26
UPF1-211ENST00000600868 ANKRD23Q86SG2 305 aa16.67■□□□□ 0.26
UPF1-211ENST00000600868 NBPF11Q86T75 865 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms