RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 FEZ1Q99689 392 aa10.43□□□□□ -0.74
TRIM28-214ENST00000600840 LSG1Q9H089 658 aaKnown RBP10.43□□□□□ -0.74
TRIM28-214ENST00000600840 TSHZ2Q9NRE2 1034 aa10.43□□□□□ -0.74
TRIM28-214ENST00000600840 DIAPH3Q9NSV4 1193 aa10.43□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L15C9J2P7 530 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L13C9JLJ4 530 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L11C9JVI0 530 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L18D6R9N7 530 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L22D6RA61 530 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L17D6RBQ6 530 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L19D6RCP7 530 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L20D6RJB6 530 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 AKR1B1P15121 316 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 GNAT2P19087 354 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 CCND3P30281 292 aaPredicted RBP10.42□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L24Q0WX57 530 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 SBK1Q52WX2 424 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 MAP3K21Q5TCX8 1036 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 IFNL3Q8IZI9 196 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 NUDT12Q9BQG2 462 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 DSCC1Q9BVC3 393 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 TTYH1Q9H313 450 aaPredicted RBP10.42□□□□□ -0.74
TRIM28-214ENST00000600840 SEMA6BQ9H3T3 888 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 RPAP3Q9H6T3 665 aaPredicted RBP10.42□□□□□ -0.74
TRIM28-214ENST00000600840 CABP5Q9NP86 173 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 ATP8A2Q9NTI2 1148 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 FLRT1Q9NZU1 646 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 TACC3Q9Y6A5 838 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 PARP14Q460N5 1801 aa10.42□□□□□ -0.74
TRIM28-214ENST00000600840 SPDYE16A6NNV3 312 aaPredicted RBP10.41□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L12C9JPN9 530 aa10.41□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L21D6R901 530 aa10.41□□□□□ -0.74
TRIM28-214ENST00000600840 MPHOSPH10O00566 681 aaKnown RBP10.41□□□□□ -0.74
TRIM28-214ENST00000600840 FGAP02671 866 aa10.41□□□□□ -0.74
TRIM28-214ENST00000600840 CACNB2Q08289 660 aaPredicted RBP10.41□□□□□ -0.74
TRIM28-214ENST00000600840 C9orf50Q5SZB4 431 aa10.41□□□□□ -0.74
TRIM28-214ENST00000600840 C12orf60Q5U649 245 aa10.41□□□□□ -0.74
TRIM28-214ENST00000600840 CTR9Q6PD62 1173 aa10.41□□□□□ -0.74
TRIM28-214ENST00000600840 PLEKHH3Q7Z736 793 aa10.41□□□□□ -0.74
TRIM28-214ENST00000600840 USP38Q8NB14 1042 aa10.41□□□□□ -0.74
TRIM28-214ENST00000600840 RUFY2Q8WXA3 655 aa10.41□□□□□ -0.74
TRIM28-214ENST00000600840 RABGAP1Q9Y3P9 1069 aa10.41□□□□□ -0.74
TRIM28-214ENST00000600840 SLC4A4Q9Y6R1 1079 aa10.41□□□□□ -0.74
TRIM28-214ENST00000600840 COL11A1P12107 1806 aaPredicted RBP10.4□□□□□ -0.74
TRIM28-214ENST00000600840 ZMYM6O95789 1325 aa10.4□□□□□ -0.74
TRIM28-214ENST00000600840 VCANP13611 3396 aa10.4□□□□□ -0.74
TRIM28-214ENST00000600840 XRCC5P13010 732 aaKnown RBP10.4□□□□□ -0.74
TRIM28-214ENST00000600840 FOSL2P15408 326 aa10.4□□□□□ -0.74
TRIM28-214ENST00000600840 MAPK4P31152 587 aa10.4□□□□□ -0.74
TRIM28-214ENST00000600840 CDK8P49336 464 aa10.4□□□□□ -0.74
TRIM28-214ENST00000600840 USP14P54578 494 aa10.4□□□□□ -0.74
TRIM28-214ENST00000600840 NECTIN1Q15223 517 aa10.4□□□□□ -0.74
TRIM28-214ENST00000600840 SHHQ15465 462 aa10.4□□□□□ -0.74
TRIM28-214ENST00000600840 NPLOC4Q8TAT6 608 aa10.4□□□□□ -0.74
TRIM28-214ENST00000600840 KCNB2Q92953 911 aa10.4□□□□□ -0.74
TRIM28-214ENST00000600840 LBHD1Q9BQE6 289 aaPredicted RBP10.4□□□□□ -0.74
TRIM28-214ENST00000600840 A0A0G2JMZ2 1700 aa10.4□□□□□ -0.74
TRIM28-214ENST00000600840 EYSQ5T1H1 3165 aa10.4□□□□□ -0.75
TRIM28-214ENST00000600840 TNFRSF10AO00220 468 aa10.39□□□□□ -0.75
TRIM28-214ENST00000600840 EPB41L2O43491 1005 aaKnown RBP10.39□□□□□ -0.75
TRIM28-214ENST00000600840 FGRP09769 529 aa10.39□□□□□ -0.75
TRIM28-214ENST00000600840 PTPREP23469 700 aa10.39□□□□□ -0.75
TRIM28-214ENST00000600840 PLA2G5P39877 138 aa10.39□□□□□ -0.75
TRIM28-214ENST00000600840 ATN1P54259 1190 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-214ENST00000600840 LHX8Q68G74 356 aa10.39□□□□□ -0.75
TRIM28-214ENST00000600840 LBX2Q6XYB7 198 aa10.39□□□□□ -0.75
TRIM28-214ENST00000600840 SPICE1Q8N0Z3 855 aa10.39□□□□□ -0.75
TRIM28-214ENST00000600840 STK11IPQ8N1F8 1099 aa10.39□□□□□ -0.75
TRIM28-214ENST00000600840 SYMPKQ92797 1274 aaKnown RBP10.39□□□□□ -0.75
TRIM28-214ENST00000600840 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.39□□□□□ -0.75
TRIM28-214ENST00000600840 USP26Q9BXU7 913 aa10.39□□□□□ -0.75
TRIM28-214ENST00000600840 SENP6Q9GZR1 1112 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-214ENST00000600840 ANAPC4Q9UJX5 808 aa10.39□□□□□ -0.75
TRIM28-214ENST00000600840 SPTBN5Q9NRC6 3674 aaKnown RBP10.39□□□□□ -0.75
TRIM28-214ENST00000600840 GREB1LQ9C091 1923 aaPredicted RBP10.39□□□□□ -0.75
TRIM28-214ENST00000600840 ZNFX1Q9P2E3 1918 aaKnown RBP10.39□□□□□ -0.75
TRIM28-214ENST00000600840 TMEM265A0A087WTH1 108 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 IGHA2P01877 340 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 ZKSCAN1P17029 563 aaPredicted RBP10.38□□□□□ -0.75
TRIM28-214ENST00000600840 RGS2P41220 211 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 MFAP1P55081 439 aaKnown RBP10.38□□□□□ -0.75
TRIM28-214ENST00000600840 MAP2K5Q13163 448 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 WDR78Q5VTH9 848 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 TMEM179Q6ZVK1 233 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 C16orf86Q6ZW13 317 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 TRPV1Q8NER1 839 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 GTF3C2Q8WUA4 911 aaPredicted RBP10.38□□□□□ -0.75
TRIM28-214ENST00000600840 SOCS4Q8WXH5 440 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 MOV10L1Q9BXT6 1211 aaKnown RBP10.38□□□□□ -0.75
TRIM28-214ENST00000600840 BACH2Q9BYV9 841 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 TMX2Q9Y320 296 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 TAF6LQ9Y6J9 622 aa10.38□□□□□ -0.75
TRIM28-214ENST00000600840 SLC15A5A6NIM6 579 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 COBLO75128 1261 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 CYP21A2P08686 494 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 EEF2P13639 858 aaKnown RBP10.37□□□□□ -0.75
TRIM28-214ENST00000600840 DSG3P32926 999 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 CYP2C19P33261 490 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 ICA1Q05084 483 aa10.37□□□□□ -0.75
TRIM28-214ENST00000600840 COL9A3Q14050 684 aaPredicted RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms