RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 CABP5Q9NP86 173 aa17.52■□□□□ 0.4
VRK3-218ENST00000600031 OFD1O75665 1012 aa17.51■□□□□ 0.39
VRK3-218ENST00000600031 SNHG28P0DPA3 235 aa17.51■□□□□ 0.39
VRK3-218ENST00000600031 TRIM29Q14134 588 aa17.51■□□□□ 0.39
VRK3-218ENST00000600031 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.51■□□□□ 0.39
VRK3-218ENST00000600031 CPVLQ9H3G5 476 aa17.51■□□□□ 0.39
VRK3-218ENST00000600031 GGA3Q9NZ52 723 aa17.51■□□□□ 0.39
VRK3-218ENST00000600031 FRMPD2Q68DX3 1309 aaPredicted RBP17.51■□□□□ 0.39
VRK3-218ENST00000600031 KIF28PB7ZC32 967 aa17.51■□□□□ 0.39
VRK3-218ENST00000600031 VEGFAP15692 232 aaPredicted RBP17.51■□□□□ 0.39
VRK3-218ENST00000600031 LMOD1P29536 600 aaPredicted RBP17.51■□□□□ 0.39
VRK3-218ENST00000600031 KIF23Q02241 960 aaPredicted RBP17.51■□□□□ 0.39
VRK3-218ENST00000600031 KCNJ14Q9UNX9 436 aa17.51■□□□□ 0.39
VRK3-218ENST00000600031 ZNF500O60304 480 aaPredicted RBP17.5■□□□□ 0.39
VRK3-218ENST00000600031 GRIN3BO60391 1043 aa17.5■□□□□ 0.39
VRK3-218ENST00000600031 NBPF12Q5TAG4 269 aaPredicted RBP17.5■□□□□ 0.39
VRK3-218ENST00000600031 USP48Q86UV5 1035 aa17.5■□□□□ 0.39
VRK3-218ENST00000600031 APOBEC3FQ8IUX4 373 aaKnown RBP17.5■□□□□ 0.39
VRK3-218ENST00000600031 LZTS2Q9BRK4 669 aa17.5■□□□□ 0.39
VRK3-218ENST00000600031 ADARB2Q9NS39 739 aaKnown RBP17.5■□□□□ 0.39
VRK3-218ENST00000600031 TFIP11Q9UBB9 837 aaKnown RBP17.5■□□□□ 0.39
VRK3-218ENST00000600031 FIBPO43427 364 aa17.5■□□□□ 0.39
VRK3-218ENST00000600031 PRAMEF18Q5VWM3 479 aa17.5■□□□□ 0.39
VRK3-218ENST00000600031 VPS54Q9P1Q0 977 aa17.5■□□□□ 0.39
VRK3-218ENST00000600031 CCDC39Q9UFE4 941 aa17.5■□□□□ 0.39
VRK3-218ENST00000600031 ZBTB21Q9ULJ3 1066 aa17.5■□□□□ 0.39
VRK3-218ENST00000600031 PHF20L1A8MW92 1017 aa17.49■□□□□ 0.39
VRK3-218ENST00000600031 CAP2P40123 477 aa17.49■□□□□ 0.39
VRK3-218ENST00000600031 TERF1P54274 439 aa17.49■□□□□ 0.39
VRK3-218ENST00000600031 KRT85P78386 507 aa17.49■□□□□ 0.39
VRK3-218ENST00000600031 PFKFB3Q16875 520 aaPredicted RBP17.49■□□□□ 0.39
VRK3-218ENST00000600031 ASPRV1Q53RT3 343 aa17.49■□□□□ 0.39
VRK3-218ENST00000600031 DPY19L2Q6NUT2 758 aa17.49■□□□□ 0.39
VRK3-218ENST00000600031 SPZ1Q9BXG8 430 aa17.49■□□□□ 0.39
VRK3-218ENST00000600031 UBA5Q9GZZ9 404 aa17.49■□□□□ 0.39
VRK3-218ENST00000600031 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.49■□□□□ 0.39
VRK3-218ENST00000600031 POLR2AP24928 1970 aaKnown RBP17.48■□□□□ 0.39
VRK3-218ENST00000600031 A0A1W2PRG0 241 aa17.48■□□□□ 0.39
VRK3-218ENST00000600031 LETM1O95202 739 aaPredicted RBP17.48■□□□□ 0.39
VRK3-218ENST00000600031 MMP1P03956 469 aa17.48■□□□□ 0.39
VRK3-218ENST00000600031 SCG2P13521 617 aa17.48■□□□□ 0.39
VRK3-218ENST00000600031 ZNF543Q08ER8 600 aa17.48■□□□□ 0.39
VRK3-218ENST00000600031 GPCPD1Q9NPB8 672 aa17.48■□□□□ 0.39
VRK3-218ENST00000600031 ZKSCAN5Q9Y2L8 839 aa17.48■□□□□ 0.39
VRK3-218ENST00000600031 MYH15Q9Y2K3 1946 aa17.48■□□□□ 0.39
VRK3-218ENST00000600031 UVSSAQ2YD98 709 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 BTBD18B2RXH4 712 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 F5H6K3 240 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 RAD21O60216 631 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 GADD45BO75293 160 aaPredicted RBP17.47■□□□□ 0.39
VRK3-218ENST00000600031 U2AF2P26368 475 aaKnown RBP eCLIP17.47■□□□□ 0.39
VRK3-218ENST00000600031 SMARCA1P28370 1054 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 ECE1P42892 770 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 KLRC3Q07444 240 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 SLFN13Q68D06 897 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 TTBK2Q6IQ55 1244 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 KCTD1Q719H9 257 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 BRAPQ7Z569 592 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 ACER1Q8TDN7 264 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 L3MBTL3Q96JM7 780 aaPredicted RBP17.47■□□□□ 0.39
VRK3-218ENST00000600031 PHF20Q9BVI0 1012 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 FTOQ9C0B1 505 aaKnown RBP eCLIP17.47■□□□□ 0.39
VRK3-218ENST00000600031 VAT1LQ9HCJ6 419 aa17.47■□□□□ 0.39
VRK3-218ENST00000600031 XBP1P17861 261 aa17.46■□□□□ 0.39
VRK3-218ENST00000600031 CSPP1Q1MSJ5 1256 aa17.46■□□□□ 0.39
VRK3-218ENST00000600031 CCDC96Q2M329 555 aa17.46■□□□□ 0.39
VRK3-218ENST00000600031 DIS3L2Q8IYB7 885 aaKnown RBP17.46■□□□□ 0.39
VRK3-218ENST00000600031 RIOX1Q9H6W3 641 aa17.46■□□□□ 0.39
VRK3-218ENST00000600031 SOCS7O14512 581 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 RRP9O43818 475 aaKnown RBP17.45■□□□□ 0.38
VRK3-218ENST00000600031 SAFBQ15424 915 aaKnown RBP eCLIP17.45■□□□□ 0.38
VRK3-218ENST00000600031 GPATCH4Q5T3I0 446 aaKnown RBP17.45■□□□□ 0.38
VRK3-218ENST00000600031 CCDC183Q5T5S1 534 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 GMCL1P1Q8NEA9 526 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 OXER1Q8TDS5 423 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 GPKOWQ92917 476 aaPredicted RBP eCLIP17.45■□□□□ 0.38
VRK3-218ENST00000600031 USP28Q96RU2 1077 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 GLTPD2A6NH11 291 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 NDUFB10O96000 172 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 SLC1A4P43007 532 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 UBE2HP62256 183 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 CEBPZQ03701 1054 aaKnown RBP17.45■□□□□ 0.38
VRK3-218ENST00000600031 GNL2Q13823 731 aaKnown RBP17.45■□□□□ 0.38
VRK3-218ENST00000600031 MYSM1Q5VVJ2 828 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 CCDC84Q86UT8 332 aaPredicted RBP17.45■□□□□ 0.38
VRK3-218ENST00000600031 HOMER1Q86YM7 354 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 DCAF4Q8WV16 495 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 PIGSQ96S52 555 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 ARHGEF10LQ9HCE6 1279 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.45■□□□□ 0.38
VRK3-218ENST00000600031 PITPNM2Q9BZ72 1349 aa17.45■□□□□ 0.38
VRK3-218ENST00000600031 ASNSP08243 561 aa17.44■□□□□ 0.38
VRK3-218ENST00000600031 SLC16A2P36021 539 aa17.44■□□□□ 0.38
VRK3-218ENST00000600031 NR5A1Q13285 461 aa17.44■□□□□ 0.38
VRK3-218ENST00000600031 NPY5RQ15761 445 aa17.44■□□□□ 0.38
VRK3-218ENST00000600031 TYW1BQ6NUM6 668 aa17.44■□□□□ 0.38
VRK3-218ENST00000600031 RNF214Q8ND24 703 aa17.44■□□□□ 0.38
VRK3-218ENST00000600031 LEO1Q8WVC0 666 aaPredicted RBP17.44■□□□□ 0.38
VRK3-218ENST00000600031 ZNF396Q96N95 335 aaPredicted RBP17.44■□□□□ 0.38
VRK3-218ENST00000600031 NUP88Q99567 741 aaPredicted RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms