RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PLA2G4DQ86XP0 818 aa22.59■■□□□ 1.21
UPF1-207ENST00000599848 SMC5Q8IY18 1101 aa22.59■■□□□ 1.21
UPF1-207ENST00000599848 XRCC6P12956 609 aaKnown RBP eCLIP22.59■■□□□ 1.21
UPF1-207ENST00000599848 HSP90AA4PQ58FG1 418 aa22.59■■□□□ 1.21
UPF1-207ENST00000599848 TSPYL6Q8N831 410 aa22.59■■□□□ 1.21
UPF1-207ENST00000599848 PARP2Q9UGN5 583 aa22.59■■□□□ 1.21
UPF1-207ENST00000599848 A6NNZ2 444 aa22.58■■□□□ 1.21
UPF1-207ENST00000599848 NEURL1BA8MQ27 555 aa22.58■■□□□ 1.21
UPF1-207ENST00000599848 TUBB8Q3ZCM7 444 aa22.58■■□□□ 1.21
UPF1-207ENST00000599848 PLEKHM2Q8IWE5 1019 aa22.58■■□□□ 1.21
UPF1-207ENST00000599848 TTLL6Q8N841 843 aa22.58■■□□□ 1.21
UPF1-207ENST00000599848 ABL1P00519 1130 aa22.58■■□□□ 1.21
UPF1-207ENST00000599848 IGHDP01880 384 aa22.58■■□□□ 1.21
UPF1-207ENST00000599848 HOXA7P31268 230 aaPredicted RBP22.58■■□□□ 1.21
UPF1-207ENST00000599848 UAP1Q16222 522 aaPredicted RBP22.58■■□□□ 1.21
UPF1-207ENST00000599848 MIS18BP1Q6P0N0 1132 aa22.58■■□□□ 1.21
UPF1-207ENST00000599848 FNBP4Q8N3X1 1017 aaPredicted RBP22.58■■□□□ 1.21
UPF1-207ENST00000599848 ZSCAN10Q96SZ4 725 aaPredicted RBP22.58■■□□□ 1.21
UPF1-207ENST00000599848 DOK7Q18PE1 504 aa22.58■■□□□ 1.21
UPF1-207ENST00000599848 P3H4Q92791 437 aa22.58■■□□□ 1.21
UPF1-207ENST00000599848 TTC1Q99614 292 aa22.58■■□□□ 1.21
UPF1-207ENST00000599848 SPDYE16A6NNV3 312 aaPredicted RBP22.58■■□□□ 1.2
UPF1-207ENST00000599848 RNASELQ05823 741 aaKnown RBP22.58■■□□□ 1.2
UPF1-207ENST00000599848 SPDYE2Q495Y8 402 aa22.58■■□□□ 1.2
UPF1-207ENST00000599848 SEC62Q99442 399 aaKnown RBP22.58■■□□□ 1.2
UPF1-207ENST00000599848 TCOF1Q13428 1488 aaKnown RBP22.58■■□□□ 1.2
UPF1-207ENST00000599848 USP17L12C9JPN9 530 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 USP17L21D6R901 530 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 CACTINQ8WUQ7 758 aaKnown RBP22.57■■□□□ 1.2
UPF1-207ENST00000599848 MAGEF1Q9HAY2 307 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 KDRP35968 1356 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 HSPA1LP34931 641 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 KRT81Q14533 505 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 LGR6Q9HBX8 967 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 PIM2Q9P1W9 311 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 PLXNC1O60486 1568 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 KANSL2Q9H9L4 492 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 CRKLP46109 303 aaKnown RBP22.57■■□□□ 1.2
UPF1-207ENST00000599848 CCDC186Q7Z3E2 898 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 SLC7A3Q8WY07 619 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 BCAP29Q9UHQ4 241 aa22.57■■□□□ 1.2
UPF1-207ENST00000599848 STAM2O75886 525 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 ELF1P32519 619 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 FAM160B2Q86V87 743 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 MMS19Q96T76 1030 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 GNAT1P11488 350 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 WDR11Q9BZH6 1224 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 SUGCTQ9HAC7 445 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 PLEKHG1Q9ULL1 1385 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 CTDSPL2Q05D32 466 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 INTS8Q75QN2 995 aaKnown RBP22.56■■□□□ 1.2
UPF1-207ENST00000599848 CPLX4Q7Z7G2 160 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 ZNF654Q8IZM8 581 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 IGSF22Q8N9C0 903 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 BAG1Q99933 345 aaPredicted RBP22.56■■□□□ 1.2
UPF1-207ENST00000599848 MTIF3Q9H2K0 278 aaKnown RBP22.56■■□□□ 1.2
UPF1-207ENST00000599848 INSRP06213 1382 aa22.56■■□□□ 1.2
UPF1-207ENST00000599848 TLDC2A0PJX2 215 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 TMEM232C9JQI7 657 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 CCDC121Q6ZUS5 278 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 ST7Q9NRC1 585 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 PCDHA12Q9UN75 941 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 XRCC5P13010 732 aaKnown RBP22.55■■□□□ 1.2
UPF1-207ENST00000599848 KLHL30Q0D2K2 578 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 SFMBT2Q5VUG0 894 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 BLIDQ8IZY5 108 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 BRPF3Q9ULD4 1205 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 NEK8Q86SG6 692 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 TMTC1Q8IUR5 882 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 MAP7D3Q8IWC1 876 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 CCDC24Q8N4L8 307 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 PPFIBP2Q8ND30 876 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 IFNKQ9P0W0 207 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 PCDHB15Q9Y5E8 787 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 RAB20Q9NX57 234 aa22.55■■□□□ 1.2
UPF1-207ENST00000599848 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.54■■□□□ 1.2
UPF1-207ENST00000599848 CCND2P30279 289 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 EVCP57679 992 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 PPP2R3AQ06190 1150 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 CHRNDQ07001 517 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 PRPSAP1Q14558 356 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 PNMA1Q8ND90 353 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 PPANQ9NQ55 473 aaKnown RBP22.54■■□□□ 1.2
UPF1-207ENST00000599848 CASC4Q6P4E1 433 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 GPBP1Q86WP2 473 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 IFT81Q8WYA0 676 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 LMCD1Q9NZU5 365 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 FBXO40Q9UH90 709 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 ASIC3Q9UHC3 531 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 I3L4J1 428 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 STAT1P42224 750 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 BCAMP50895 628 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 KRT40Q6A162 431 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 GRK7Q8WTQ7 553 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 WDR46O15213 610 aaKnown RBP22.54■■□□□ 1.2
UPF1-207ENST00000599848 SCNN1DP51172 638 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 SURF1Q15526 300 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.54■■□□□ 1.2
UPF1-207ENST00000599848 MYOCDQ8IZQ8 938 aa22.54■■□□□ 1.2
UPF1-207ENST00000599848 PRR16Q569H4 304 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms