RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GTF3C2Q8WUA4 911 aaPredicted RBP23.01■■□□□ 1.27
SHKBP1-221ENST00000599833 ATG4CQ96DT6 458 aa23.01■■□□□ 1.27
SHKBP1-221ENST00000599833 TTC14Q96N46 770 aa23.01■■□□□ 1.27
SHKBP1-221ENST00000599833 CNNM2Q9H8M5 875 aa23.01■■□□□ 1.27
SHKBP1-221ENST00000599833 PPP1R9AQ9ULJ8 1098 aa23.01■■□□□ 1.27
SHKBP1-221ENST00000599833 SEC23AQ15436 765 aa23■■□□□ 1.27
SHKBP1-221ENST00000599833 PKN2Q16513 984 aaKnown RBP23■■□□□ 1.27
SHKBP1-221ENST00000599833 PPP4R3BQ5MIZ7 849 aa23■■□□□ 1.27
SHKBP1-221ENST00000599833 SLFN13Q68D06 897 aa23■■□□□ 1.27
SHKBP1-221ENST00000599833 KIAA1211Q6ZU35 1233 aa23■■□□□ 1.27
SHKBP1-221ENST00000599833 MB21D2Q8IYB1 491 aaPredicted RBP23■■□□□ 1.27
SHKBP1-221ENST00000599833 ENAHQ8N8S7 591 aaPredicted RBP23■■□□□ 1.27
SHKBP1-221ENST00000599833 GPRC5AQ8NFJ5 357 aa23■■□□□ 1.27
SHKBP1-221ENST00000599833 KRT23Q9C075 422 aa23■■□□□ 1.27
SHKBP1-221ENST00000599833 PORCNQ9H237 461 aa23■■□□□ 1.27
SHKBP1-221ENST00000599833 FLOT1O75955 427 aa22.99■■□□□ 1.27
SHKBP1-221ENST00000599833 ECM2O94769 699 aaPredicted RBP22.99■■□□□ 1.27
SHKBP1-221ENST00000599833 TOP1P11387 765 aaKnown RBP22.99■■□□□ 1.27
SHKBP1-221ENST00000599833 ANTXR2P58335 489 aa22.99■■□□□ 1.27
SHKBP1-221ENST00000599833 FBXO46Q6PJ61 603 aaPredicted RBP22.99■■□□□ 1.27
SHKBP1-221ENST00000599833 DGKHQ86XP1 1220 aa22.99■■□□□ 1.27
SHKBP1-221ENST00000599833 HOXC10Q9NYD6 342 aa22.99■■□□□ 1.27
SHKBP1-221ENST00000599833 GABRQQ9UN88 632 aa22.99■■□□□ 1.27
SHKBP1-221ENST00000599833 MKI67P46013 3256 aaKnown RBP22.99■■□□□ 1.27
SHKBP1-221ENST00000599833 GNRH1P01148 92 aa22.98■■□□□ 1.27
SHKBP1-221ENST00000599833 SNHG28P0DPA3 235 aa22.98■■□□□ 1.27
SHKBP1-221ENST00000599833 KCNB2Q92953 911 aa22.98■■□□□ 1.27
SHKBP1-221ENST00000599833 ZSCAN10Q96SZ4 725 aaPredicted RBP22.98■■□□□ 1.27
SHKBP1-221ENST00000599833 PAGR1Q9BTK6 254 aa22.98■■□□□ 1.27
SHKBP1-221ENST00000599833 SRRDQ9UH36 339 aa22.98■■□□□ 1.27
SHKBP1-221ENST00000599833 GJD2Q9UKL4 321 aa22.98■■□□□ 1.27
SHKBP1-221ENST00000599833 TNKSO95271 1327 aa22.98■■□□□ 1.27
SHKBP1-221ENST00000599833 VWA5AO00534 786 aa22.97■■□□□ 1.27
SHKBP1-221ENST00000599833 MCCP23508 829 aa22.97■■□□□ 1.27
SHKBP1-221ENST00000599833 FCGRTP55899 365 aa22.97■■□□□ 1.27
SHKBP1-221ENST00000599833 TMEM132BQ14DG7 1078 aa22.97■■□□□ 1.27
SHKBP1-221ENST00000599833 CASC1Q6TDU7 716 aa22.97■■□□□ 1.27
SHKBP1-221ENST00000599833 RASEFQ8IZ41 740 aa22.97■■□□□ 1.27
SHKBP1-221ENST00000599833 ABHD8Q96I13 439 aa22.97■■□□□ 1.27
SHKBP1-221ENST00000599833 ZNF214Q9UL59 606 aaPredicted RBP22.97■■□□□ 1.27
SHKBP1-221ENST00000599833 HPS5Q9UPZ3 1129 aa22.97■■□□□ 1.27
SHKBP1-221ENST00000599833 PTCH2Q9Y6C5 1203 aa22.97■■□□□ 1.27
SHKBP1-221ENST00000599833 PLA2G6O60733 806 aa22.96■■□□□ 1.27
SHKBP1-221ENST00000599833 BMP3P12645 472 aa22.96■■□□□ 1.27
SHKBP1-221ENST00000599833 PRKCZQ05513 592 aa22.96■■□□□ 1.27
SHKBP1-221ENST00000599833 KIF22Q14807 665 aa22.96■■□□□ 1.27
SHKBP1-221ENST00000599833 SENP2Q9HC62 589 aa22.96■■□□□ 1.27
SHKBP1-221ENST00000599833 ZNF236Q9UL36 1845 aa22.96■■□□□ 1.27
SHKBP1-221ENST00000599833 SMCHD1A6NHR9 2005 aa22.96■■□□□ 1.27
SHKBP1-221ENST00000599833 RAD21O60216 631 aa22.95■■□□□ 1.26
SHKBP1-221ENST00000599833 FMNL1O95466 1100 aaPredicted RBP22.95■■□□□ 1.26
SHKBP1-221ENST00000599833 PDHBP11177 359 aa22.95■■□□□ 1.26
SHKBP1-221ENST00000599833 TSGA10IPQ3SY00 556 aa22.95■■□□□ 1.26
SHKBP1-221ENST00000599833 MB21D1Q8N884 522 aa22.95■■□□□ 1.26
SHKBP1-221ENST00000599833 NCOA7Q8NI08 942 aa22.95■■□□□ 1.26
SHKBP1-221ENST00000599833 SLF1Q9BQI6 1058 aa22.95■■□□□ 1.26
SHKBP1-221ENST00000599833 MOV10L1Q9BXT6 1211 aaKnown RBP22.95■■□□□ 1.26
SHKBP1-221ENST00000599833 FEM1BQ9UK73 627 aa22.95■■□□□ 1.26
SHKBP1-221ENST00000599833 TNPO2O14787 897 aaKnown RBP22.94■■□□□ 1.26
SHKBP1-221ENST00000599833 SLC1A4P43007 532 aa22.94■■□□□ 1.26
SHKBP1-221ENST00000599833 KCTD1Q719H9 257 aa22.94■■□□□ 1.26
SHKBP1-221ENST00000599833 IQCA1Q86XH1 822 aa22.94■■□□□ 1.26
SHKBP1-221ENST00000599833 DCAF4Q8WV16 495 aa22.94■■□□□ 1.26
SHKBP1-221ENST00000599833 USP6NLQ92738 828 aa22.94■■□□□ 1.26
SHKBP1-221ENST00000599833 CHMP4CQ96CF2 233 aa22.94■■□□□ 1.26
SHKBP1-221ENST00000599833 SPATC1LQ9H0A9 340 aa22.94■■□□□ 1.26
SHKBP1-221ENST00000599833 TMEM232C9JQI7 657 aa22.93■■□□□ 1.26
SHKBP1-221ENST00000599833 PRMT2P55345 433 aa22.93■■□□□ 1.26
SHKBP1-221ENST00000599833 ADCK5Q3MIX3 580 aa22.93■■□□□ 1.26
SHKBP1-221ENST00000599833 CCDC178Q5BJE1 867 aa22.93■■□□□ 1.26
SHKBP1-221ENST00000599833 BTNL9Q6UXG8 535 aa22.93■■□□□ 1.26
SHKBP1-221ENST00000599833 CHST3Q7LGC8 479 aa22.93■■□□□ 1.26
SHKBP1-221ENST00000599833 PRPF38AQ8NAV1 312 aaKnown RBP22.93■■□□□ 1.26
SHKBP1-221ENST00000599833 IGDCC4Q8TDY8 1250 aa22.93■■□□□ 1.26
SHKBP1-221ENST00000599833 SLC38A10Q9HBR0 1119 aa22.93■■□□□ 1.26
SHKBP1-221ENST00000599833 ZNFX1Q9P2E3 1918 aaKnown RBP22.92■■□□□ 1.26
SHKBP1-221ENST00000599833 HSPA4P34932 840 aa22.92■■□□□ 1.26
SHKBP1-221ENST00000599833 FLT3LGP49771 235 aa22.92■■□□□ 1.26
SHKBP1-221ENST00000599833 ARHGEF6Q15052 776 aa22.92■■□□□ 1.26
SHKBP1-221ENST00000599833 MORN1Q5T089 497 aa22.92■■□□□ 1.26
SHKBP1-221ENST00000599833 IFFO2Q5TF58 517 aa22.92■■□□□ 1.26
SHKBP1-221ENST00000599833 TTBK2Q6IQ55 1244 aa22.92■■□□□ 1.26
SHKBP1-221ENST00000599833 GPR142Q7Z601 462 aa22.92■■□□□ 1.26
SHKBP1-221ENST00000599833 PNMA1Q8ND90 353 aa22.92■■□□□ 1.26
SHKBP1-221ENST00000599833 GPHNQ9NQX3 736 aaPredicted RBP22.92■■□□□ 1.26
SHKBP1-221ENST00000599833 ZNF536O15090 1300 aa22.91■■□□□ 1.26
SHKBP1-221ENST00000599833 ATP2A1O14983 1001 aa22.91■■□□□ 1.26
SHKBP1-221ENST00000599833 MAPK4P31152 587 aa22.91■■□□□ 1.26
SHKBP1-221ENST00000599833 STAT2P52630 851 aa22.91■■□□□ 1.26
SHKBP1-221ENST00000599833 ZNF543Q08ER8 600 aa22.91■■□□□ 1.26
SHKBP1-221ENST00000599833 TRDNQ13061 729 aa22.91■■□□□ 1.26
SHKBP1-221ENST00000599833 IRF5Q13568 498 aa22.91■■□□□ 1.26
SHKBP1-221ENST00000599833 SHCBP1Q8NEM2 672 aa22.91■■□□□ 1.26
SHKBP1-221ENST00000599833 RALYLQ86SE5 291 aaKnown RBP22.9■■□□□ 1.26
SHKBP1-221ENST00000599833 KIFC2Q96AC6 838 aa22.9■■□□□ 1.26
SHKBP1-221ENST00000599833 ARMC5Q96C12 935 aa22.9■■□□□ 1.26
SHKBP1-221ENST00000599833 UBAC1Q9BSL1 405 aa22.9■■□□□ 1.26
SHKBP1-221ENST00000599833 PRR12Q9ULL5 1215 aa22.9■■□□□ 1.26
SHKBP1-221ENST00000599833 RIPK3Q9Y572 518 aa22.9■■□□□ 1.26
SHKBP1-221ENST00000599833 FRMPD2Q68DX3 1309 aaPredicted RBP22.89■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms