RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TDH	Q8IZJ6	230 aa		12.64	□□□□□ -0.39
LSM4-205	ENST00000597776	OSBP2	Q969R2	916 aa		12.64	□□□□□ -0.39
LSM4-205	ENST00000597776	STRBP	Q96SI9	672 aa	Known RBP	12.64	□□□□□ -0.39
LSM4-205	ENST00000597776	KANSL2	Q9H9L4	492 aa		12.64	□□□□□ -0.39
LSM4-205	ENST00000597776	ARPP21	Q9UBL0	812 aa	Predicted RBP	12.64	□□□□□ -0.39
LSM4-205	ENST00000597776	COL11A1	P12107	1806 aa	Predicted RBP	12.63	□□□□□ -0.39
LSM4-205	ENST00000597776	GSG1L2	A8MUP6	293 aa		12.63	□□□□□ -0.39
LSM4-205	ENST00000597776	MYCN	P04198	464 aa	Predicted RBP	12.63	□□□□□ -0.39
LSM4-205	ENST00000597776	FCER1A	P12319	257 aa		12.63	□□□□□ -0.39
LSM4-205	ENST00000597776		Q7L0L9	218 aa		12.63	□□□□□ -0.39
LSM4-205	ENST00000597776	ABRA	Q8N0Z2	381 aa		12.63	□□□□□ -0.39
LSM4-205	ENST00000597776	KBTBD3	Q8NAB2	608 aa		12.63	□□□□□ -0.39
LSM4-205	ENST00000597776	MAML3	Q96JK9	1138 aa		12.63	□□□□□ -0.39
LSM4-205	ENST00000597776	NUP88	Q99567	741 aa	Predicted RBP	12.63	□□□□□ -0.39
LSM4-205	ENST00000597776	GOPC	Q9HD26	462 aa		12.63	□□□□□ -0.39
LSM4-205	ENST00000597776	ADAMTS5	Q9UNA0	930 aa		12.63	□□□□□ -0.39
LSM4-205	ENST00000597776	MINDY4B	A8MYZ0	360 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	VWA5A	O00534	786 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	SEPT4	O43236	478 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	PGK2	P07205	417 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	RASA1	P20936	1047 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	RTP1	P59025	263 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	LRIT3	Q3SXY7	679 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	SBK1	Q52WX2	424 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	APPBP2	Q92624	585 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	GPATCH3	Q96I76	525 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	MMP19	Q99542	508 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	DCTPP1	Q9H773	170 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	SLC5A4	Q9NY91	659 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	PPP1R9A	Q9ULJ8	1098 aa		12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	GREB1L	Q9C091	1923 aa	Predicted RBP	12.62	□□□□□ -0.39
LSM4-205	ENST00000597776	ROBO3	Q96MS0	1386 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	KBTBD13	C9JR72	458 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776		M0R2C6	588 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	RNF113A	O15541	343 aa	Known RBP	12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	GPAA1	O43292	621 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	SLC25A27	O95847	323 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	FAM47A	Q5JRC9	791 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	RIOX2	Q8IUF8	465 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	DEFB123	Q8N688	67 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	ARRDC4	Q8NCT1	418 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	REPS2	Q8NFH8	660 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	MKNK2	Q9HBH9	465 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	ZNF214	Q9UL59	606 aa	Predicted RBP	12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	ATP11B	Q9Y2G3	1177 aa		12.61	□□□□□ -0.39
LSM4-205	ENST00000597776	PRDM1	O75626	825 aa		12.6	□□□□□ -0.39
LSM4-205	ENST00000597776	NDUFB10	O96000	172 aa		12.6	□□□□□ -0.39
LSM4-205	ENST00000597776	TAL1	P17542	331 aa	Predicted RBP	12.6	□□□□□ -0.39
LSM4-205	ENST00000597776	STAT3	P40763	770 aa		12.6	□□□□□ -0.39
LSM4-205	ENST00000597776	TDO2	P48775	406 aa		12.6	□□□□□ -0.39
LSM4-205	ENST00000597776	LRRC41	Q15345	812 aa		12.6	□□□□□ -0.39
LSM4-205	ENST00000597776	GIMAP6	Q6P9H5	292 aa		12.6	□□□□□ -0.39
LSM4-205	ENST00000597776	OTUD7A	Q8TE49	926 aa	Predicted RBP	12.6	□□□□□ -0.39
LSM4-205	ENST00000597776	FERMT2	Q96AC1	680 aa		12.6	□□□□□ -0.39
LSM4-205	ENST00000597776	LBHD1	Q9BQE6	289 aa	Predicted RBP	12.6	□□□□□ -0.39
LSM4-205	ENST00000597776		F5H6K3	240 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	APP	P05067	770 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	ADCYAP1R1	P41586	468 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	KLRC3	Q07444	240 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	KCTD2	Q14681	263 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	ZNF792	Q3KQV3	632 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	TRIM60	Q495X7	471 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	GPR153	Q6NV75	609 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	SLC39A5	Q6ZMH5	540 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	LENG1	Q96BZ8	264 aa	Predicted RBP	12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	SEC62	Q99442	399 aa	Known RBP	12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	SLF1	Q9BQI6	1058 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	NYAP2	Q9P242	653 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776	CLIP2	Q9UDT6	1046 aa		12.59	□□□□□ -0.39
LSM4-205	ENST00000597776		A0A0C4DFX4	3053 aa		12.58	□□□□□ -0.39
LSM4-205	ENST00000597776	LTBP2	Q14767	1821 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	IGKV6D-41	A0A0C4DH26	115 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	PGK1	P00558	417 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	ZFY	P08048	801 aa	Predicted RBP	12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	SLC4A3	P48751	1232 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	SNRNP48	Q6IEG0	339 aa	Known RBP	12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	LRRC47	Q8N1G4	583 aa	Known RBP	12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	SLC17A8	Q8NDX2	589 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	CEP95	Q96GE4	821 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	TINF2	Q9BSI4	451 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	TEX13B	Q9BXU2	312 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	XPNPEP3	Q9NQH7	507 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	PRDM5	Q9NQX1	630 aa	Predicted RBP	12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	PRKAG2	Q9UGJ0	569 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	RIPK3	Q9Y572	518 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	PCDHB15	Q9Y5E8	787 aa		12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	ZNFX1	Q9P2E3	1918 aa	Known RBP	12.58	□□□□□ -0.4
LSM4-205	ENST00000597776	PLXNA1	Q9UIW2	1896 aa		12.57	□□□□□ -0.4
LSM4-205	ENST00000597776	RARB	P10826	455 aa		12.57	□□□□□ -0.4
LSM4-205	ENST00000597776	GNAT2	P19087	354 aa		12.57	□□□□□ -0.4
LSM4-205	ENST00000597776	SNX17	Q15036	470 aa		12.57	□□□□□ -0.4
LSM4-205	ENST00000597776	ZNF444	Q8N0Y2	327 aa	Predicted RBP	12.57	□□□□□ -0.4
LSM4-205	ENST00000597776	CPXCR1	Q8N123	301 aa		12.57	□□□□□ -0.4
LSM4-205	ENST00000597776	PI4K2B	Q8TCG2	481 aa		12.57	□□□□□ -0.4
LSM4-205	ENST00000597776	KIFC2	Q96AC6	838 aa		12.57	□□□□□ -0.4
LSM4-205	ENST00000597776	MTMR10	Q9NXD2	777 aa		12.57	□□□□□ -0.4
LSM4-205	ENST00000597776	PATL2	C9JE40	543 aa	Known RBP	12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	ZNF865	P0CJ78	1059 aa	Predicted RBP	12.56	□□□□□ -0.4
LSM4-205	ENST00000597776	COPB2	P35606	906 aa		12.56	□□□□□ -0.4

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