RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 MYLIPQ8WY64 445 aa19.88■□□□□ 0.77
SHKBP1-215ENST00000597649 VCPKMTQ9H867 229 aa19.88■□□□□ 0.77
SHKBP1-215ENST00000597649 FBXO28Q9NVF7 368 aa19.88■□□□□ 0.77
SHKBP1-215ENST00000597649 SLC5A4Q9NY91 659 aa19.88■□□□□ 0.77
SHKBP1-215ENST00000597649 SWAP70Q9UH65 585 aa19.88■□□□□ 0.77
SHKBP1-215ENST00000597649 ADAMTS5Q9UNA0 930 aa19.88■□□□□ 0.77
SHKBP1-215ENST00000597649 PHF24Q9UPV7 400 aa19.88■□□□□ 0.77
SHKBP1-215ENST00000597649 CHGBP05060 677 aa19.87■□□□□ 0.77
SHKBP1-215ENST00000597649 PGK2P07205 417 aa19.87■□□□□ 0.77
SHKBP1-215ENST00000597649 FCER1AP12319 257 aa19.87■□□□□ 0.77
SHKBP1-215ENST00000597649 MAFAQ8NHW3 353 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-215ENST00000597649 DNAJC2Q99543 621 aaKnown RBP19.87■□□□□ 0.77
SHKBP1-215ENST00000597649 A0A0G2JMZ2 1700 aa19.87■□□□□ 0.77
SHKBP1-215ENST00000597649 PGK1P00558 417 aa19.86■□□□□ 0.77
SHKBP1-215ENST00000597649 CENPBP07199 599 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-215ENST00000597649 CDK8P49336 464 aa19.86■□□□□ 0.77
SHKBP1-215ENST00000597649 ICA1Q05084 483 aa19.86■□□□□ 0.77
SHKBP1-215ENST00000597649 PANK1Q8TE04 598 aa19.86■□□□□ 0.77
SHKBP1-215ENST00000597649 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.86■□□□□ 0.77
SHKBP1-215ENST00000597649 ARHGEF10LQ9HCE6 1279 aa19.86■□□□□ 0.77
SHKBP1-215ENST00000597649 XPNPEP3Q9NQH7 507 aa19.86■□□□□ 0.77
SHKBP1-215ENST00000597649 APBB1O00213 710 aa19.85■□□□□ 0.77
SHKBP1-215ENST00000597649 SLC25A27O95847 323 aa19.85■□□□□ 0.77
SHKBP1-215ENST00000597649 ZNF792Q3KQV3 632 aa19.85■□□□□ 0.77
SHKBP1-215ENST00000597649 C12orf60Q5U649 245 aa19.85■□□□□ 0.77
SHKBP1-215ENST00000597649 LENG1Q96BZ8 264 aaPredicted RBP19.85■□□□□ 0.77
SHKBP1-215ENST00000597649 MMP19Q99542 508 aa19.85■□□□□ 0.77
SHKBP1-215ENST00000597649 TINF2Q9BSI4 451 aa19.85■□□□□ 0.77
SHKBP1-215ENST00000597649 NAV1Q8NEY1 1877 aa19.85■□□□□ 0.77
SHKBP1-215ENST00000597649 CHD9Q3L8U1 2897 aa19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 WDR46O15213 610 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 MBD4O95243 580 aa19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 ZNF865P0CJ78 1059 aaPredicted RBP19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 RARBP10826 455 aa19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 MS4A1P11836 297 aa19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 EEF2P13639 858 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 ADD2P35612 726 aa19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 RIOX2Q8IUF8 465 aa19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 ATP8A2Q9NTI2 1148 aa19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 NRBP1Q9UHY1 535 aa19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 TACC3Q9Y6A5 838 aa19.84■□□□□ 0.77
SHKBP1-215ENST00000597649 ZNFX1Q9P2E3 1918 aaKnown RBP19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 USP17L12C9JPN9 530 aa19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 USP17L21D6R901 530 aa19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 KIAA0355O15063 1070 aa19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 CLTBP09497 229 aa19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 HSP90AB4PQ58FF6 505 aa19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 SIRT2Q8IXJ6 389 aa19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 CLASRPQ8N2M8 674 aaKnown RBP19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 REPS2Q8NFH8 660 aa19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 CCDC17Q96LX7 622 aa19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 BCL11AQ9H165 835 aa19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 ZNF214Q9UL59 606 aaPredicted RBP19.83■□□□□ 0.77
SHKBP1-215ENST00000597649 A0A1W2PQ45 241 aaPredicted RBP19.82■□□□□ 0.76
SHKBP1-215ENST00000597649 A0A1W2PQY0 241 aa19.82■□□□□ 0.76
SHKBP1-215ENST00000597649 VWA5AO00534 786 aa19.82■□□□□ 0.76
SHKBP1-215ENST00000597649 STAT3P40763 770 aa19.82■□□□□ 0.76
SHKBP1-215ENST00000597649 C16orf86Q6ZW13 317 aa19.82■□□□□ 0.76
SHKBP1-215ENST00000597649 RNF180Q86T96 592 aa19.82■□□□□ 0.76
SHKBP1-215ENST00000597649 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.82■□□□□ 0.76
SHKBP1-215ENST00000597649 BOLA2Q9H3K6 86 aa19.82■□□□□ 0.76
SHKBP1-215ENST00000597649 SH2D4AQ9H788 454 aa19.82■□□□□ 0.76
SHKBP1-215ENST00000597649 PPP1R9AQ9ULJ8 1098 aa19.82■□□□□ 0.76
SHKBP1-215ENST00000597649 DIS3Q9Y2L1 958 aaKnown RBP19.82■□□□□ 0.76
SHKBP1-215ENST00000597649 PQBP1O60828 265 aaKnown RBP19.81■□□□□ 0.76
SHKBP1-215ENST00000597649 ADAMTS4O75173 837 aa19.81■□□□□ 0.76
SHKBP1-215ENST00000597649 IFIT2P09913 472 aaKnown RBP19.81■□□□□ 0.76
SHKBP1-215ENST00000597649 KIF1BPQ96EK5 621 aa19.81■□□□□ 0.76
SHKBP1-215ENST00000597649 RNPC3Q96LT9 517 aaKnown RBP19.81■□□□□ 0.76
SHKBP1-215ENST00000597649 PAG1Q9NWQ8 432 aa19.81■□□□□ 0.76
SHKBP1-215ENST00000597649 FAAP100Q0VG06 881 aa19.8■□□□□ 0.76
SHKBP1-215ENST00000597649 KCTD2Q14681 263 aa19.8■□□□□ 0.76
SHKBP1-215ENST00000597649 FAM83BQ5T0W9 1011 aa19.8■□□□□ 0.76
SHKBP1-215ENST00000597649 KANSL2Q9H9L4 492 aa19.8■□□□□ 0.76
SHKBP1-215ENST00000597649 TMEM39AQ9NV64 488 aa19.8■□□□□ 0.76
SHKBP1-215ENST00000597649 FOSL2P15408 326 aa19.79■□□□□ 0.76
SHKBP1-215ENST00000597649 RAG1P15918 1043 aa19.79■□□□□ 0.76
SHKBP1-215ENST00000597649 IRX5P78411 483 aaPredicted RBP19.79■□□□□ 0.76
SHKBP1-215ENST00000597649 GRIN2CQ14957 1233 aa19.79■□□□□ 0.76
SHKBP1-215ENST00000597649 CCSAPQ6IQ19 270 aaPredicted RBP19.79■□□□□ 0.76
SHKBP1-215ENST00000597649 CTR9Q6PD62 1173 aa19.79■□□□□ 0.76
SHKBP1-215ENST00000597649 ANKRD33Q7Z3H0 272 aa19.79■□□□□ 0.76
SHKBP1-215ENST00000597649 KLHDC9Q8NEP7 349 aa19.79■□□□□ 0.76
SHKBP1-215ENST00000597649 PARP14Q460N5 1801 aa19.79■□□□□ 0.76
SHKBP1-215ENST00000597649 SNAI1O95863 264 aaPredicted RBP19.78■□□□□ 0.76
SHKBP1-215ENST00000597649 AKR1A1P14550 325 aa19.78■□□□□ 0.76
SHKBP1-215ENST00000597649 ATP5JP18859 108 aa19.78■□□□□ 0.76
SHKBP1-215ENST00000597649 ACLYP53396 1101 aa19.78■□□□□ 0.76
SHKBP1-215ENST00000597649 RRP1P56182 461 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-215ENST00000597649 NUP88Q99567 741 aaPredicted RBP19.78■□□□□ 0.76
SHKBP1-215ENST00000597649 HAUS7Q99871 368 aa19.78■□□□□ 0.76
SHKBP1-215ENST00000597649 RIPK3Q9Y572 518 aa19.78■□□□□ 0.76
SHKBP1-215ENST00000597649 BAZ2AQ9UIF9 1905 aaKnown RBP19.78■□□□□ 0.76
SHKBP1-215ENST00000597649 COL11A1P12107 1806 aaPredicted RBP19.77■□□□□ 0.76
SHKBP1-215ENST00000597649 FPGSQ05932 587 aa19.77■□□□□ 0.76
SHKBP1-215ENST00000597649 KCNA10Q16322 511 aa19.77■□□□□ 0.76
SHKBP1-215ENST00000597649 USP38Q8NB14 1042 aa19.77■□□□□ 0.76
SHKBP1-215ENST00000597649 TOX2Q96NM4 488 aa19.77■□□□□ 0.76
SHKBP1-215ENST00000597649 TSEN34Q9BSV6 310 aaKnown RBP19.77■□□□□ 0.76
SHKBP1-215ENST00000597649 PUS7LQ9H0K6 701 aaKnown RBP19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms