RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 GPRC5AQ8NFJ5 357 aa13.06□□□□□ -0.32
LIG1-211ENST00000596457 TRIM47Q96LD4 638 aa13.06□□□□□ -0.32
LIG1-211ENST00000596457 CNNM2Q9H8M5 875 aa13.06□□□□□ -0.32
LIG1-211ENST00000596457 TXNRD2Q9NNW7 524 aa13.06□□□□□ -0.32
LIG1-211ENST00000596457 FBXO28Q9NVF7 368 aa13.06□□□□□ -0.32
LIG1-211ENST00000596457 HOXC10Q9NYD6 342 aa13.06□□□□□ -0.32
LIG1-211ENST00000596457 RBPJLQ9UBG7 517 aa13.06□□□□□ -0.32
LIG1-211ENST00000596457 COL11A1P12107 1806 aaPredicted RBP13.06□□□□□ -0.32
LIG1-211ENST00000596457 PARP14Q460N5 1801 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 SPDYE16A6NNV3 312 aaPredicted RBP13.05□□□□□ -0.32
LIG1-211ENST00000596457 E7EWF7 191 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 TNPO2O14787 897 aaKnown RBP13.05□□□□□ -0.32
LIG1-211ENST00000596457 MCCP23508 829 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 HOXD10P28358 340 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 DSG3P32926 999 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 SLC4A3P48751 1232 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 ERVK-9P63128 1117 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 ERVK-24P63145 666 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 FAM110CQ1W6H9 321 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 RALYLQ86SE5 291 aaKnown RBP13.05□□□□□ -0.32
LIG1-211ENST00000596457 NBPF11Q86T75 865 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 IQCA1Q86XH1 822 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 GTF3C2Q8WUA4 911 aaPredicted RBP13.05□□□□□ -0.32
LIG1-211ENST00000596457 ATG4CQ96DT6 458 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 TMEM47Q9BQJ4 181 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 TCP11L1Q9NUJ3 509 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 BTBD7Q9P203 1132 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 ZSWIM5Q9P217 1185 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 CTDP1Q9Y5B0 961 aaPredicted RBP13.05□□□□□ -0.32
LIG1-211ENST00000596457 TAF6LQ9Y6J9 622 aa13.05□□□□□ -0.32
LIG1-211ENST00000596457 RLFQ13129 1914 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 TMEM232C9JQI7 657 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 SLC27A2O14975 620 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 CNMDO75829 334 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 TOP1P11387 765 aaKnown RBP13.04□□□□□ -0.32
LIG1-211ENST00000596457 BMP3P12645 472 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 SLC1A4P43007 532 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 CCDC96Q2M329 555 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 CREB3L3Q68CJ9 461 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 POTEEQ6S8J3 1075 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 KCTD1Q719H9 257 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 CYB5R4Q7L1T6 521 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 CHST3Q7LGC8 479 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 GMCL1P1Q8NEA9 526 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 NCOA7Q8NI08 942 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 KIFC2Q96AC6 838 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 COA7Q96BR5 231 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 ZSCAN10Q96SZ4 725 aaPredicted RBP13.04□□□□□ -0.32
LIG1-211ENST00000596457 UBAC1Q9BSL1 405 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 MORF4L1Q9UBU8 362 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 GABRQQ9UN88 632 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 RABGAP1Q9Y3P9 1069 aa13.04□□□□□ -0.32
LIG1-211ENST00000596457 CCDC178Q5BJE1 867 aa13.03□□□□□ -0.32
LIG1-211ENST00000596457 STOX1Q6ZVD7 989 aa13.03□□□□□ -0.32
LIG1-211ENST00000596457 RASGRP2Q7LDG7 609 aa13.03□□□□□ -0.32
LIG1-211ENST00000596457 RAET1EQ8TD07 263 aa13.03□□□□□ -0.32
LIG1-211ENST00000596457 ARMC5Q96C12 935 aa13.03□□□□□ -0.32
LIG1-211ENST00000596457 SLF1Q9BQI6 1058 aa13.03□□□□□ -0.32
LIG1-211ENST00000596457 KAT14Q9H8E8 782 aa13.03□□□□□ -0.32
LIG1-211ENST00000596457 GPCPD1Q9NPB8 672 aa13.03□□□□□ -0.32
LIG1-211ENST00000596457 PTCH2Q9Y6C5 1203 aa13.03□□□□□ -0.32
LIG1-211ENST00000596457 TNKSO95271 1327 aa13.03□□□□□ -0.32
LIG1-211ENST00000596457 FRMPD2Q68DX3 1309 aaPredicted RBP13.03□□□□□ -0.32
LIG1-211ENST00000596457 MYPNQ86TC9 1320 aa13.03□□□□□ -0.32
LIG1-211ENST00000596457 IFIT3O14879 490 aaKnown RBP13.02□□□□□ -0.33
LIG1-211ENST00000596457 CCNA1P78396 465 aa13.02□□□□□ -0.33
LIG1-211ENST00000596457 PRKCZQ05513 592 aa13.02□□□□□ -0.33
LIG1-211ENST00000596457 NECTIN1Q15223 517 aa13.02□□□□□ -0.33
LIG1-211ENST00000596457 RCSD1Q6JBY9 416 aa13.02□□□□□ -0.33
LIG1-211ENST00000596457 LBX2Q6XYB7 198 aa13.02□□□□□ -0.33
LIG1-211ENST00000596457 TTC14Q96N46 770 aa13.02□□□□□ -0.33
LIG1-211ENST00000596457 PORCNQ9H237 461 aa13.02□□□□□ -0.33
LIG1-211ENST00000596457 SRRDQ9UH36 339 aa13.02□□□□□ -0.33
LIG1-211ENST00000596457 FEM1BQ9UK73 627 aa13.02□□□□□ -0.33
LIG1-211ENST00000596457 PPP1R9AQ9ULJ8 1098 aa13.02□□□□□ -0.33
LIG1-211ENST00000596457 ERICH2A1L162 156 aa13.01□□□□□ -0.33
LIG1-211ENST00000596457 ZBED4O75132 1171 aa13.01□□□□□ -0.33
LIG1-211ENST00000596457 MYCP01106 439 aaPredicted RBP13.01□□□□□ -0.33
LIG1-211ENST00000596457 MAPK4P31152 587 aa13.01□□□□□ -0.33
LIG1-211ENST00000596457 SNAP25P60880 206 aa13.01□□□□□ -0.33
LIG1-211ENST00000596457 IFIT1BQ5T764 474 aaKnown RBP13.01□□□□□ -0.33
LIG1-211ENST00000596457 RNF20Q5VTR2 975 aa13.01□□□□□ -0.33
LIG1-211ENST00000596457 NCAPG2Q86XI2 1143 aa13.01□□□□□ -0.33
LIG1-211ENST00000596457 DGKHQ86XP1 1220 aa13.01□□□□□ -0.33
LIG1-211ENST00000596457 CPXCR1Q8N123 301 aa13.01□□□□□ -0.33
LIG1-211ENST00000596457 ENAHQ8N8S7 591 aaPredicted RBP13.01□□□□□ -0.33
LIG1-211ENST00000596457 PRPF38AQ8NAV1 312 aaKnown RBP13.01□□□□□ -0.33
LIG1-211ENST00000596457 DCAF4Q8WV16 495 aa13.01□□□□□ -0.33
LIG1-211ENST00000596457 TMEM106CQ9BVX2 250 aa13.01□□□□□ -0.33
LIG1-211ENST00000596457 BIN2Q9UBW5 565 aaPredicted RBP13.01□□□□□ -0.33
LIG1-211ENST00000596457 SYNPO2Q9UMS6 1093 aa13.01□□□□□ -0.33
LIG1-211ENST00000596457 DOCK3Q8IZD9 2030 aa13□□□□□ -0.33
LIG1-211ENST00000596457 PLXNB2O15031 1838 aa13□□□□□ -0.33
LIG1-211ENST00000596457 RBBP6Q7Z6E9 1792 aaKnown RBP13□□□□□ -0.33
LIG1-211ENST00000596457 A0A0G2JMZ2 1700 aa13□□□□□ -0.33
LIG1-211ENST00000596457 VWA5AO00534 786 aa13□□□□□ -0.33
LIG1-211ENST00000596457 REC8O95072 547 aa13□□□□□ -0.33
LIG1-211ENST00000596457 SLC16A2P36021 539 aa13□□□□□ -0.33
LIG1-211ENST00000596457 NOVP48745 357 aa13□□□□□ -0.33
LIG1-211ENST00000596457 FLT3LGP49771 235 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms