RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 SAMD1Q6SPF0 538 aaPredicted RBP13.18□□□□□ -0.3
VRK3-210ENST00000596121 STOX1Q6ZVD7 989 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 REPS2Q8NFH8 660 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 ARMC5Q96C12 935 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 TMEM47Q9BQJ4 181 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 ZKSCAN3Q9BRR0 538 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 ZSWIM5Q9P217 1185 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 CTNNA3Q9UI47 895 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 PPP1R9AQ9ULJ8 1098 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 SYNPO2Q9UMS6 1093 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 STX8Q9UNK0 236 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 LAMA4Q16363 1823 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 MYH4Q9Y623 1939 aa13.17□□□□□ -0.3
VRK3-210ENST00000596121 PCP11498 1178 aaKnown RBP13.17□□□□□ -0.3
VRK3-210ENST00000596121 MCCP23508 829 aa13.17□□□□□ -0.3
VRK3-210ENST00000596121 HOXD10P28358 340 aa13.17□□□□□ -0.3
VRK3-210ENST00000596121 PRMT2P55345 433 aa13.17□□□□□ -0.3
VRK3-210ENST00000596121 TMEM132BQ14DG7 1078 aa13.17□□□□□ -0.3
VRK3-210ENST00000596121 CYB5R4Q7L1T6 521 aa13.17□□□□□ -0.3
VRK3-210ENST00000596121 GPR142Q7Z601 462 aa13.17□□□□□ -0.3
VRK3-210ENST00000596121 GTF3C2Q8WUA4 911 aaPredicted RBP13.17□□□□□ -0.3
VRK3-210ENST00000596121 USP6NLQ92738 828 aa13.17□□□□□ -0.3
VRK3-210ENST00000596121 MOV10L1Q9BXT6 1211 aaKnown RBP13.17□□□□□ -0.3
VRK3-210ENST00000596121 RNF41Q9H4P4 317 aaPredicted RBP13.17□□□□□ -0.3
VRK3-210ENST00000596121 RBM8AQ9Y5S9 174 aaKnown RBP13.17□□□□□ -0.3
VRK3-210ENST00000596121 U3KPZ7 1027 aaPredicted RBP13.17□□□□□ -0.3
VRK3-210ENST00000596121 PARP14Q460N5 1801 aa13.17□□□□□ -0.3
VRK3-210ENST00000596121 A0A0G2JMZ2 1700 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 PLXNB2O15031 1838 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 VWA5AO00534 786 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 ELNP15502 786 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 SOX10P56693 466 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 MORN1Q5T089 497 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 ESR2Q92731 530 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 COA7Q96BR5 231 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 GMCL1Q96IK5 515 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 ZNF333Q96JL9 665 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 SLF1Q9BQI6 1058 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 SPATC1LQ9H0A9 340 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 BRCA2P51587 3418 aa13.16□□□□□ -0.3
VRK3-210ENST00000596121 E7EWF7 191 aa13.15□□□□□ -0.3
VRK3-210ENST00000596121 CDC45O75419 566 aa13.15□□□□□ -0.3
VRK3-210ENST00000596121 MYCP01106 439 aaPredicted RBP13.15□□□□□ -0.3
VRK3-210ENST00000596121 TOP1P11387 765 aaKnown RBP13.15□□□□□ -0.3
VRK3-210ENST00000596121 BMP3P12645 472 aa13.15□□□□□ -0.3
VRK3-210ENST00000596121 MAPK4P31152 587 aa13.15□□□□□ -0.3
VRK3-210ENST00000596121 SLC9C1Q4G0N8 1177 aa13.15□□□□□ -0.3
VRK3-210ENST00000596121 TTBK2Q6IQ55 1244 aa13.15□□□□□ -0.3
VRK3-210ENST00000596121 KCTD1Q719H9 257 aa13.15□□□□□ -0.3
VRK3-210ENST00000596121 PLEKHH3Q7Z736 793 aa13.15□□□□□ -0.3
VRK3-210ENST00000596121 RAET1EQ8TD07 263 aa13.15□□□□□ -0.3
VRK3-210ENST00000596121 ANKS1AQ92625 1134 aa13.15□□□□□ -0.3
VRK3-210ENST00000596121 ZNF214Q9UL59 606 aaPredicted RBP13.15□□□□□ -0.3
VRK3-210ENST00000596121 MTMR7Q9Y216 660 aa13.15□□□□□ -0.3
VRK3-210ENST00000596121 TMEM232C9JQI7 657 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 SLC27A2O14975 620 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 ADCY3O60266 1144 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 ERCC3P19447 782 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 GRK4P32298 578 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 SNAP25P60880 206 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 TRIM32Q13049 653 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 IRF5Q13568 498 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 NECTIN1Q15223 517 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 MTFR1Q15390 333 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 MB21D1Q8N884 522 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 ENAHQ8N8S7 591 aaPredicted RBP13.14□□□□□ -0.31
VRK3-210ENST00000596121 TTC14Q96N46 770 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 ZSCAN10Q96SZ4 725 aaPredicted RBP13.14□□□□□ -0.31
VRK3-210ENST00000596121 SENP2Q9HC62 589 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 RIPK3Q9Y572 518 aa13.14□□□□□ -0.31
VRK3-210ENST00000596121 KIAA0100Q14667 2235 aaKnown RBP13.14□□□□□ -0.31
VRK3-210ENST00000596121 POTEFA5A3E0 1075 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 CYP2B6P20813 491 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 PTPREP23469 700 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 SLC1A4P43007 532 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 ANTXR2P58335 489 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 CCNA1P78396 465 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 PLS1Q14651 629 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 SEC23AQ15436 765 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 CCL14Q16627 93 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 PPP4R3BQ5MIZ7 849 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 KIAA1211Q6ZU35 1233 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 CHST3Q7LGC8 479 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 DGKHQ86XP1 1220 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 PRPF38AQ8NAV1 312 aaKnown RBP13.13□□□□□ -0.31
VRK3-210ENST00000596121 KIFC2Q96AC6 838 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 KRT23Q9C075 422 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 SLC38A10Q9HBR0 1119 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 ANO2Q9NQ90 1003 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 FEM1BQ9UK73 627 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 COL11A1P12107 1806 aaPredicted RBP13.13□□□□□ -0.31
VRK3-210ENST00000596121 ZNF536O15090 1300 aa13.13□□□□□ -0.31
VRK3-210ENST00000596121 FRMPD2Q68DX3 1309 aaPredicted RBP13.13□□□□□ -0.31
VRK3-210ENST00000596121 SNHG28P0DPA3 235 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 PDHBP11177 359 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 TAL1P17542 331 aaPredicted RBP13.12□□□□□ -0.31
VRK3-210ENST00000596121 SLC16A2P36021 539 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 STAT3P40763 770 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 GRB14Q14449 540 aa13.12□□□□□ -0.31
VRK3-210ENST00000596121 WDR78Q5VTH9 848 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms