RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 HPS5Q9UPZ3 1129 aa14.03□□□□□ -0.16
LIG3-213ENST00000590630 RBM8AQ9Y5S9 174 aaKnown RBP14.03□□□□□ -0.16
LIG3-213ENST00000590630 B4E1Z4 1266 aa14.02□□□□□ -0.17
LIG3-213ENST00000590630 KDM4AO75164 1064 aa14.02□□□□□ -0.17
LIG3-213ENST00000590630 ECM2O94769 699 aaPredicted RBP14.02□□□□□ -0.17
LIG3-213ENST00000590630 TOP1P11387 765 aaKnown RBP14.02□□□□□ -0.17
LIG3-213ENST00000590630 MAPK4P31152 587 aa14.02□□□□□ -0.17
LIG3-213ENST00000590630 TRDNQ13061 729 aa14.02□□□□□ -0.17
LIG3-213ENST00000590630 SLFN13Q68D06 897 aa14.02□□□□□ -0.17
LIG3-213ENST00000590630 COA7Q96BR5 231 aa14.02□□□□□ -0.17
LIG3-213ENST00000590630 NUP88Q99567 741 aaPredicted RBP14.02□□□□□ -0.17
LIG3-213ENST00000590630 ANO2Q9NQ90 1003 aa14.02□□□□□ -0.17
LIG3-213ENST00000590630 PPP1R9AQ9ULJ8 1098 aa14.02□□□□□ -0.17
LIG3-213ENST00000590630 ADAMTS5Q9UNA0 930 aa14.02□□□□□ -0.17
LIG3-213ENST00000590630 PLXNB2O15031 1838 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 CNMDO75829 334 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 BMP3P12645 472 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 SLC1A4P43007 532 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 Q3C1V9 767 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 DGKHQ86XP1 1220 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 CCAR1Q8IX12 1150 aaKnown RBP14.01□□□□□ -0.17
LIG3-213ENST00000590630 PRPF38AQ8NAV1 312 aaKnown RBP14.01□□□□□ -0.17
LIG3-213ENST00000590630 ATG4CQ96DT6 458 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 SLF1Q9BQI6 1058 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 FBXO28Q9NVF7 368 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 BTBD7Q9P203 1132 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 ZSWIM5Q9P217 1185 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 FEM1BQ9UK73 627 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 PTCH2Q9Y6C5 1203 aa14.01□□□□□ -0.17
LIG3-213ENST00000590630 VWA5AO00534 786 aa14□□□□□ -0.17
LIG3-213ENST00000590630 PEX10O60683 326 aa14□□□□□ -0.17
LIG3-213ENST00000590630 PRKCZQ05513 592 aa14□□□□□ -0.17
LIG3-213ENST00000590630 RCSD1Q6JBY9 416 aa14□□□□□ -0.17
LIG3-213ENST00000590630 NKX2-3Q8TAU0 364 aa14□□□□□ -0.17
LIG3-213ENST00000590630 RAET1EQ8TD07 263 aa14□□□□□ -0.17
LIG3-213ENST00000590630 ZSCAN10Q96SZ4 725 aaPredicted RBP14□□□□□ -0.17
LIG3-213ENST00000590630 TMEM47Q9BQJ4 181 aa14□□□□□ -0.17
LIG3-213ENST00000590630 UBAC1Q9BSL1 405 aa14□□□□□ -0.17
LIG3-213ENST00000590630 E7EWF7 191 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 MCCP23508 829 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 FLT3LGP49771 235 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 STAT2P52630 851 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 IRF5Q13568 498 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 SLC9C1Q4G0N8 1177 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 SAMD1Q6SPF0 538 aaPredicted RBP13.99□□□□□ -0.17
LIG3-213ENST00000590630 RALYLQ86SE5 291 aaKnown RBP13.99□□□□□ -0.17
LIG3-213ENST00000590630 NBPF11Q86T75 865 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 NCOA7Q8NI08 942 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 DCAF4Q8WV16 495 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 SOCS4Q8WXH5 440 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 ZKSCAN3Q9BRR0 538 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 SPATC1LQ9H0A9 340 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 PORCNQ9H237 461 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 ZNFX1Q9P2E3 1918 aaKnown RBP13.99□□□□□ -0.17
LIG3-213ENST00000590630 ZNF236Q9UL36 1845 aa13.99□□□□□ -0.17
LIG3-213ENST00000590630 KIAA0100Q14667 2235 aaKnown RBP13.98□□□□□ -0.17
LIG3-213ENST00000590630 TNKSO95271 1327 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 PLA2G6O60733 806 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 FDX1P10109 184 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 NECTIN1Q15223 517 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 IFFO2Q5TF58 517 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 RNF20Q5VTR2 975 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 GPR142Q7Z601 462 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 PLEKHH3Q7Z736 793 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 FAM160B2Q86V87 743 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 ENAHQ8N8S7 591 aaPredicted RBP13.98□□□□□ -0.17
LIG3-213ENST00000590630 SHCBP1Q8NEM2 672 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 CHURC1Q8WUH1 139 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 ANKS1AQ92625 1134 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 ARMC5Q96C12 935 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 MOV10L1Q9BXT6 1211 aaKnown RBP13.98□□□□□ -0.17
LIG3-213ENST00000590630 CWC22Q9HCG8 908 aaKnown RBP13.98□□□□□ -0.17
LIG3-213ENST00000590630 ISY1Q9ULR0 285 aaKnown RBP13.98□□□□□ -0.17
LIG3-213ENST00000590630 GABRQQ9UN88 632 aa13.98□□□□□ -0.17
LIG3-213ENST00000590630 RBBP6Q7Z6E9 1792 aaKnown RBP13.98□□□□□ -0.17
LIG3-213ENST00000590630 CCDC85CA6NKD9 419 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 TMEM232C9JQI7 657 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 SLC27A2O14975 620 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 REC8O95072 547 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 SLC25A27O95847 323 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 COPB2P35606 906 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 IKQ13123 557 aaPredicted RBP13.97□□□□□ -0.17
LIG3-213ENST00000590630 PLS1Q14651 629 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 TMEM132BQ14DG7 1078 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 SART3Q15020 963 aaKnown RBP13.97□□□□□ -0.17
LIG3-213ENST00000590630 CREB3L3Q68CJ9 461 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 STOX1Q6ZVD7 989 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 SLAIN1Q8ND83 568 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 REPS2Q8NFH8 660 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 PXYLP1Q8TE99 480 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 KIFC2Q96AC6 838 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 NUDT12Q9BQG2 462 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 MROH8Q9H579 483 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 KAT14Q9H8E8 782 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 GJD2Q9UKL4 321 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 ZNF214Q9UL59 606 aaPredicted RBP13.97□□□□□ -0.17
LIG3-213ENST00000590630 TAF6LQ9Y6J9 622 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 IVNS1ABPQ9Y6Y0 642 aa13.97□□□□□ -0.17
LIG3-213ENST00000590630 ATP2A1O14983 1001 aa13.96□□□□□ -0.17
LIG3-213ENST00000590630 STRNO43815 780 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms