RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 RPAP3Q9H6T3 665 aaPredicted RBP12.49□□□□□ -0.41
LIG3-212ENST00000590181 CWC22Q9HCG8 908 aaKnown RBP12.49□□□□□ -0.41
LIG3-212ENST00000590181 IVNS1ABPQ9Y6Y0 642 aa12.49□□□□□ -0.41
LIG3-212ENST00000590181 ZMYM6O95789 1325 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 MINDY4BA8MYZ0 360 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 PEX10O60683 326 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 SLC25A27O95847 323 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 RASA1P20936 1047 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 RGS2P41220 211 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 LRRC26Q2I0M4 334 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.48□□□□□ -0.41
LIG3-212ENST00000590181 ABRAQ8N0Z2 381 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 ACER1Q8TDN7 264 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 APBA2Q99767 749 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 MROH8Q9H579 483 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 TXNRD2Q9NNW7 524 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 ANAPC4Q9UJX5 808 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 ADAMTS5Q9UNA0 930 aa12.48□□□□□ -0.41
LIG3-212ENST00000590181 SUPT16HQ9Y5B9 1047 aaKnown RBP12.48□□□□□ -0.41
LIG3-212ENST00000590181 A0A1W2PRG0 241 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 TTLL1O95922 423 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 HOXC6P09630 235 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 CYP2D6P10635 497 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 EEF2P13639 858 aaKnown RBP12.47□□□□□ -0.41
LIG3-212ENST00000590181 AKR1B1P15121 316 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 CCND3P30281 292 aaPredicted RBP12.47□□□□□ -0.41
LIG3-212ENST00000590181 DSG3P32926 999 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 CACNB2Q08289 660 aaPredicted RBP12.47□□□□□ -0.41
LIG3-212ENST00000590181 TSHZ3Q63HK5 1081 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 SIAH1Q8IUQ4 282 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 EXOC6Q8TAG9 804 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 USP6NLQ92738 828 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 GUCD1Q96NT3 240 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 PAGR1Q9BTK6 254 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 TANGO6Q9C0B7 1094 aa12.47□□□□□ -0.41
LIG3-212ENST00000590181 PLIN4Q96Q06 1357 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 SPDYE16A6NNV3 312 aaPredicted RBP12.46□□□□□ -0.41
LIG3-212ENST00000590181 TRIM6-TRIM34B2RNG4 842 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 M0R2C6 588 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 PPARAQ07869 468 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 ZYXQ15942 572 aaKnown RBP12.46□□□□□ -0.41
LIG3-212ENST00000590181 CCL14Q16627 93 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 SLFNL1Q499Z3 407 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 MORN1Q5T089 497 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 GPR142Q7Z601 462 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 PLEKHM2Q8IWE5 1019 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 SLC44A5Q8NCS7 719 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 NEDD1Q8NHV4 660 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 OTUD7AQ8TE49 926 aaPredicted RBP12.46□□□□□ -0.41
LIG3-212ENST00000590181 LNPKQ9C0E8 428 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 PORCNQ9H237 461 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 CDH23Q9H251 3354 aa12.46□□□□□ -0.41
LIG3-212ENST00000590181 GREB1LQ9C091 1923 aaPredicted RBP12.46□□□□□ -0.42
LIG3-212ENST00000590181 ORC4O43929 436 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 MSCO60682 206 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 FLOT1O75955 427 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 FGRP09769 529 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 TSPY3P0CV98 308 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 TSPY8P0CW00 308 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 PTPREP23469 700 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 MAP2K5Q13163 448 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 SHROOM1Q2M3G4 852 aaPredicted RBP12.45□□□□□ -0.42
LIG3-212ENST00000590181 Q3C1V9 767 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 CCDC178Q5BJE1 867 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 RCSD1Q6JBY9 416 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 PRPF38AQ8NAV1 312 aaKnown RBP12.45□□□□□ -0.42
LIG3-212ENST00000590181 GMCL1P1Q8NEA9 526 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 FAM161BQ96MY7 647 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 RNF41Q9H4P4 317 aaPredicted RBP12.45□□□□□ -0.42
LIG3-212ENST00000590181 MTMR4Q9NYA4 1195 aa12.45□□□□□ -0.42
LIG3-212ENST00000590181 CYP2D7A0A087X1C5 515 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 IGKV6D-41A0A0C4DH26 115 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 ATP2A1O14983 1001 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 PLA2G6O60733 806 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 IGHDP01880 384 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 ZNF697Q5TEC3 545 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 MFSD14CQ5VZR4 134 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 LHX8Q68G74 356 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 TTC14Q96N46 770 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 LBHD1Q9BQE6 289 aaPredicted RBP12.44□□□□□ -0.42
LIG3-212ENST00000590181 SPATC1LQ9H0A9 340 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 EPB41L4AQ9HCS5 686 aaPredicted RBP12.44□□□□□ -0.42
LIG3-212ENST00000590181 TCP11L1Q9NUJ3 509 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 NRBP1Q9UHY1 535 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 CTNNA3Q9UI47 895 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 FEM1BQ9UK73 627 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 PNMA2Q9UL42 364 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 DIS3Q9Y2L1 958 aaKnown RBP12.44□□□□□ -0.42
LIG3-212ENST00000590181 MYH4Q9Y623 1939 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 PARP14Q460N5 1801 aa12.44□□□□□ -0.42
LIG3-212ENST00000590181 TTC28Q96AY4 2481 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 F5H6K3 240 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 CNMDO75829 334 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 CHGBP05060 677 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 OAZ1P54368 228 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 ATP2B2Q01814 1243 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 KLRC3Q07444 240 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 GRB14Q14449 540 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 OLFML2BQ68BL8 750 aa12.43□□□□□ -0.42
LIG3-212ENST00000590181 FAM109BQ6ICB4 259 aaPredicted RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms