RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 USP17L19D6RCP7 530 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 USP17L20D6RJB6 530 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 ZBTB43O43298 467 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 PDHBP11177 359 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 AK2P54819 239 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 USP17L24Q0WX57 530 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 IKQ13123 557 aaPredicted RBP15.91■□□□□ 0.14
VMP1-210ENST00000589823 MOGSQ13724 837 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 FAM83BQ5T0W9 1011 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 APOA5Q6Q788 366 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 ANKRD23Q86SG2 305 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 TANGO6Q9C0B7 1094 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 BRPF3Q9ULD4 1205 aa15.91■□□□□ 0.14
VMP1-210ENST00000589823 PTPRFP10586 1907 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 GOLGA8BA8MQT2 603 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 PARP1P09874 1014 aaKnown RBP15.9■□□□□ 0.14
VMP1-210ENST00000589823 SNHG28P0DPA3 235 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 OSBPP22059 807 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 KIF5BP33176 963 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 TM4SF4P48230 202 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 IRX3P78415 501 aaPredicted RBP15.9■□□□□ 0.14
VMP1-210ENST00000589823 TROAPQ12815 778 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 ASPRV1Q53RT3 343 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 TREML2Q5T2D2 321 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 GPATCH4Q5T3I0 446 aaKnown RBP15.9■□□□□ 0.14
VMP1-210ENST00000589823 GPAT2Q6NUI2 795 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 MICU3Q86XE3 530 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 CTCFLQ8NI51 663 aaPredicted RBP15.9■□□□□ 0.14
VMP1-210ENST00000589823 ZIC5Q96T25 663 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 MAP3K14Q99558 947 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 NUP88Q99567 741 aaPredicted RBP15.9■□□□□ 0.14
VMP1-210ENST00000589823 MYL10Q9BUA6 226 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 FEM1BQ9UK73 627 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 PNMA3Q9UL41 463 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 SLC45A1Q9Y2W3 748 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 FRMPD2Q68DX3 1309 aaPredicted RBP15.9■□□□□ 0.14
VMP1-210ENST00000589823 LOC285556D6RIA3 1793 aa15.9■□□□□ 0.14
VMP1-210ENST00000589823 PDHXO00330 501 aa15.89■□□□□ 0.13
VMP1-210ENST00000589823 HOXA7P31268 230 aaPredicted RBP15.89■□□□□ 0.13
VMP1-210ENST00000589823 METAP2P50579 478 aaKnown RBP eCLIP15.89■□□□□ 0.13
VMP1-210ENST00000589823 RCAN1P53805 252 aa15.89■□□□□ 0.13
VMP1-210ENST00000589823 ZNF543Q08ER8 600 aa15.89■□□□□ 0.13
VMP1-210ENST00000589823 CATSPERGQ6ZRH7 1159 aa15.89■□□□□ 0.13
VMP1-210ENST00000589823 KCTD1Q719H9 257 aa15.89■□□□□ 0.13
VMP1-210ENST00000589823 NOL8Q76FK4 1167 aaKnown RBP15.89■□□□□ 0.13
VMP1-210ENST00000589823 IFNL1Q8IU54 200 aa15.89■□□□□ 0.13
VMP1-210ENST00000589823 ZNF274Q96GC6 653 aaPredicted RBP15.89■□□□□ 0.13
VMP1-210ENST00000589823 PTPN18Q99952 460 aa15.89■□□□□ 0.13
VMP1-210ENST00000589823 ZCCHC17Q9NP64 241 aaKnown RBP15.89■□□□□ 0.13
VMP1-210ENST00000589823 GPCPD1Q9NPB8 672 aa15.89■□□□□ 0.13
VMP1-210ENST00000589823 GOLGA8AA7E2F4 631 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 TMEM232C9JQI7 657 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 IGF2BP3O00425 579 aaKnown RBP eCLIP15.88■□□□□ 0.13
VMP1-210ENST00000589823 FLOT1O75955 427 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 RXRAP19793 462 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 STAT2P52630 851 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 EVCP57679 992 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 GRM4Q14833 912 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 RASGRP2Q7LDG7 609 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 FAM160B2Q86V87 743 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 RAB11FIP4Q86YS3 637 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 CCDC144CPQ8IYA2 1237 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 FAM43AQ8N2R8 423 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 CHURC1Q8WUH1 139 aa15.88■□□□□ 0.13
VMP1-210ENST00000589823 LARP6Q9BRS8 491 aaKnown RBP15.88■□□□□ 0.13
VMP1-210ENST00000589823 ALDH1A1P00352 501 aa15.87■□□□□ 0.13
VMP1-210ENST00000589823 GOLGA8HP0CJ92 632 aa15.87■□□□□ 0.13
VMP1-210ENST00000589823 PDIA3P30101 505 aaKnown RBP15.87■□□□□ 0.13
VMP1-210ENST00000589823 MCM2P49736 904 aa15.87■□□□□ 0.13
VMP1-210ENST00000589823 GNAQP50148 359 aa15.87■□□□□ 0.13
VMP1-210ENST00000589823 COG2Q14746 738 aa15.87■□□□□ 0.13
VMP1-210ENST00000589823 PPP2R5BQ15173 497 aa15.87■□□□□ 0.13
VMP1-210ENST00000589823 RTN1Q16799 776 aa15.87■□□□□ 0.13
VMP1-210ENST00000589823 SAMD1Q6SPF0 538 aaPredicted RBP15.87■□□□□ 0.13
VMP1-210ENST00000589823 FANCBQ8NB91 859 aa15.87■□□□□ 0.13
VMP1-210ENST00000589823 PARK7Q99497 189 aaKnown RBP15.87■□□□□ 0.13
VMP1-210ENST00000589823 ASCC2Q9H1I8 757 aaPredicted RBP15.87■□□□□ 0.13
VMP1-210ENST00000589823 RBM28Q9NW13 759 aaKnown RBP15.87■□□□□ 0.13
VMP1-210ENST00000589823 MAD2L2Q9UI95 211 aa15.87■□□□□ 0.13
VMP1-210ENST00000589823 LIMCH1Q9UPQ0 1083 aa15.87■□□□□ 0.13
VMP1-210ENST00000589823 CCDC196A0A1B0GTZ2 297 aa15.86■□□□□ 0.13
VMP1-210ENST00000589823 PALM3A6NDB9 673 aaPredicted RBP15.86■□□□□ 0.13
VMP1-210ENST00000589823 KLRF2D3W0D1 207 aa15.86■□□□□ 0.13
VMP1-210ENST00000589823 PLA2G6O60733 806 aa15.86■□□□□ 0.13
VMP1-210ENST00000589823 STK3Q13188 491 aa15.86■□□□□ 0.13
VMP1-210ENST00000589823 TAF1CQ15572 869 aaPredicted RBP15.86■□□□□ 0.13
VMP1-210ENST00000589823 PRPF38AQ8NAV1 312 aaKnown RBP15.86■□□□□ 0.13
VMP1-210ENST00000589823 KIFC2Q96AC6 838 aa15.86■□□□□ 0.13
VMP1-210ENST00000589823 SLF1Q9BQI6 1058 aa15.86■□□□□ 0.13
VMP1-210ENST00000589823 SLKQ9H2G2 1235 aaPredicted RBP15.86■□□□□ 0.13
VMP1-210ENST00000589823 HOXC10Q9NYD6 342 aa15.86■□□□□ 0.13
VMP1-210ENST00000589823 TPCN1Q9ULQ1 816 aa15.86■□□□□ 0.13
VMP1-210ENST00000589823 CTDP1Q9Y5B0 961 aaPredicted RBP15.86■□□□□ 0.13
VMP1-210ENST00000589823 DSG3P32926 999 aa15.85■□□□□ 0.13
VMP1-210ENST00000589823 CCT2P78371 535 aaKnown RBP15.85■□□□□ 0.13
VMP1-210ENST00000589823 MAP2K1Q02750 393 aaPredicted RBP15.85■□□□□ 0.13
VMP1-210ENST00000589823 TTBK2Q6IQ55 1244 aa15.85■□□□□ 0.13
VMP1-210ENST00000589823 STAG2Q8N3U4 1231 aa15.85■□□□□ 0.13
VMP1-210ENST00000589823 SMCR8Q8TEV9 937 aaPredicted RBP15.85■□□□□ 0.13
VMP1-210ENST00000589823 GTF3C2Q8WUA4 911 aaPredicted RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms