RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 BRD1O95696 1058 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 GNAQP50148 359 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 NUCB2P80303 420 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 ZYXQ15942 572 aaKnown RBP13.13□□□□□ -0.31
VMP1-207ENST00000588131 CCDC96Q2M329 555 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 ASPRV1Q53RT3 343 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 LARP1BQ659C4 914 aaKnown RBP13.13□□□□□ -0.31
VMP1-207ENST00000588131 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.13□□□□□ -0.31
VMP1-207ENST00000588131 DCAF4Q8WV16 495 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 NUP88Q99567 741 aaPredicted RBP13.13□□□□□ -0.31
VMP1-207ENST00000588131 RNF26Q9BY78 433 aaPredicted RBP13.13□□□□□ -0.31
VMP1-207ENST00000588131 GPCPD1Q9NPB8 672 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 SYNPO2Q9UMS6 1093 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 MTMR6Q9Y217 621 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 SNCAIPQ9Y6H5 919 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 MYH6P13533 1939 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 PRPF3O43395 683 aaKnown RBP13.12□□□□□ -0.31
VMP1-207ENST00000588131 CYTH3O43739 400 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 PPP1R12BO60237 982 aaPredicted RBP13.12□□□□□ -0.31
VMP1-207ENST00000588131 PTPRAP18433 802 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 NF2P35240 595 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 MAP3K9P80192 1104 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 VGLL4Q14135 290 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 PKN1Q16512 942 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 FOXD4L5Q5VV16 416 aaPredicted RBP13.12□□□□□ -0.31
VMP1-207ENST00000588131 TTBK2Q6IQ55 1244 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 KCTD1Q719H9 257 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 TRIM22Q8IYM9 498 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 FOXD4L4Q8WXT5 416 aaPredicted RBP13.12□□□□□ -0.31
VMP1-207ENST00000588131 ALG1Q9BT22 464 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 UBA5Q9GZZ9 404 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 VCPKMTQ9H867 229 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 PICK1Q9NRD5 415 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 GJB4Q9NTQ9 266 aa13.12□□□□□ -0.31
VMP1-207ENST00000588131 V9GY48 417 aaPredicted RBP13.12□□□□□ -0.31
VMP1-207ENST00000588131 VPS37CA5D8V6 355 aaPredicted RBP13.11□□□□□ -0.31
VMP1-207ENST00000588131 DEXIO95424 95 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 ATXN8OSP0DMR3 200 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 PDCP20941 246 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 SLC1A4P43007 532 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 IREB2P48200 963 aaKnown RBP13.11□□□□□ -0.31
VMP1-207ENST00000588131 GUCY1B3Q02153 619 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 DGKZQ13574 1117 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 TTLL12Q14166 644 aaPredicted RBP13.11□□□□□ -0.31
VMP1-207ENST00000588131 OTUD7BQ6GQQ9 843 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 SPICE1Q8N0Z3 855 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 PIBF1Q8WXW3 757 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 SHISA4Q96DD7 197 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 GMCL1Q96IK5 515 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 LZTS2Q9BRK4 669 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 SH2D4AQ9H788 454 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 ZNF408Q9H9D4 720 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 GOPCQ9HD26 462 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.11□□□□□ -0.31
VMP1-207ENST00000588131 KIF3AQ9Y496 699 aa13.11□□□□□ -0.31
VMP1-207ENST00000588131 WDR33Q9C0J8 1336 aaKnown RBP13.11□□□□□ -0.31
VMP1-207ENST00000588131 ZSCAN22P10073 491 aaPredicted RBP13.1□□□□□ -0.31
VMP1-207ENST00000588131 BMP3P12645 472 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 SLC16A2P36021 539 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 AKAP17AQ02040 695 aaKnown RBP13.1□□□□□ -0.31
VMP1-207ENST00000588131 SPP2Q13103 211 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 MAP3K11Q16584 847 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 GPATCH4Q5T3I0 446 aaKnown RBP13.1□□□□□ -0.31
VMP1-207ENST00000588131 TNPO1Q92973 898 aaKnown RBP13.1□□□□□ -0.31
VMP1-207ENST00000588131 CLMNQ96JQ2 1002 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 C8orf76Q96K31 380 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 FEZ1Q99689 392 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 WDR18Q9BV38 432 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 SPZ1Q9BXG8 430 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 KIAA1683Q9H0B3 1180 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 RIOX1Q9H6W3 641 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 AS3MTQ9HBK9 375 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 ISY1Q9ULR0 285 aaKnown RBP13.1□□□□□ -0.31
VMP1-207ENST00000588131 ZHX2Q9Y6X8 837 aa13.1□□□□□ -0.31
VMP1-207ENST00000588131 H3BQV1 296 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 SMARCA1P28370 1054 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 MTMR2Q13614 643 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 FAM83BQ5T0W9 1011 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 CHADLQ6NUI6 762 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 ARMC9Q7Z3E5 817 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 ANKRD13AQ8IZ07 590 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 ZNF280CQ8ND82 737 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 WASF1Q92558 559 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 PIGSQ96S52 555 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 ELP3Q9H9T3 547 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 VAT1LQ9HCJ6 419 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 EMILIN3Q9NT22 766 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 CSADQ9Y600 493 aa13.09□□□□□ -0.31
VMP1-207ENST00000588131 TRIM75PA6NK02 468 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 USP17L10C9JJH3 530 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 TMEM232C9JQI7 657 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 F13A1P00488 732 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 SCG2P13521 617 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 PFKFB3Q16875 520 aaPredicted RBP13.08□□□□□ -0.32
VMP1-207ENST00000588131 KRT40Q6A162 431 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 FERMT3Q86UX7 667 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 HOMER1Q86YM7 354 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 ADGRF4Q8IZF3 695 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 FBXO18Q8NFZ0 1043 aa13.08□□□□□ -0.32
VMP1-207ENST00000588131 CHAMP1Q96JM3 812 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms