RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 F5H6K3 240 aa33.4■■■□□ 2.94
LIG3-208ENST00000586407 HSPD1P10809 573 aaKnown RBP33.4■■■□□ 2.94
LIG3-208ENST00000586407 PTPREP23469 700 aa33.4■■■□□ 2.94
LIG3-208ENST00000586407 KLRC3Q07444 240 aa33.4■■■□□ 2.94
LIG3-208ENST00000586407 MAP2K5Q13163 448 aa33.4■■■□□ 2.94
LIG3-208ENST00000586407 XRN2Q9H0D6 950 aaKnown RBP eCLIP33.4■■■□□ 2.94
LIG3-208ENST00000586407 FGAP02671 866 aa33.39■■■□□ 2.94
LIG3-208ENST00000586407 ZKSCAN1P17029 563 aaPredicted RBP33.39■■■□□ 2.94
LIG3-208ENST00000586407 ALX1Q15699 326 aa33.39■■■□□ 2.94
LIG3-208ENST00000586407 NKX2-3Q8TAU0 364 aa33.39■■■□□ 2.94
LIG3-208ENST00000586407 APBA2Q99767 749 aa33.39■■■□□ 2.94
LIG3-208ENST00000586407 PAK6Q9NQU5 681 aaPredicted RBP33.39■■■□□ 2.94
LIG3-208ENST00000586407 SGPL1O95470 568 aa33.38■■■□□ 2.93
LIG3-208ENST00000586407 XRCC5P13010 732 aaKnown RBP33.38■■■□□ 2.93
LIG3-208ENST00000586407 ERCC3P19447 782 aa33.38■■■□□ 2.93
LIG3-208ENST00000586407 CHMP4CQ96CF2 233 aa33.38■■■□□ 2.93
LIG3-208ENST00000586407 SLC15A5A6NIM6 579 aa33.37■■■□□ 2.93
LIG3-208ENST00000586407 NMT2O60551 498 aa33.37■■■□□ 2.93
LIG3-208ENST00000586407 HAND2P61296 217 aa33.37■■■□□ 2.93
LIG3-208ENST00000586407 TMEM132BQ14DG7 1078 aa33.37■■■□□ 2.93
LIG3-208ENST00000586407 CWC27Q6UX04 472 aaKnown RBP33.37■■■□□ 2.93
LIG3-208ENST00000586407 MB21D1Q8N884 522 aa33.37■■■□□ 2.93
LIG3-208ENST00000586407 DIAPH3Q9NSV4 1193 aa33.37■■■□□ 2.93
LIG3-208ENST00000586407 ANAPC4Q9UJX5 808 aa33.37■■■□□ 2.93
LIG3-208ENST00000586407 PPP1R9AQ9ULJ8 1098 aa33.37■■■□□ 2.93
LIG3-208ENST00000586407 IVNS1ABPQ9Y6Y0 642 aa33.37■■■□□ 2.93
LIG3-208ENST00000586407 TTLL1O95922 423 aa33.36■■■□□ 2.93
LIG3-208ENST00000586407 PRKAR2AP13861 404 aaKnown RBP33.36■■■□□ 2.93
LIG3-208ENST00000586407 GRB14Q14449 540 aa33.36■■■□□ 2.93
LIG3-208ENST00000586407 TICAM2Q86XR7 235 aa33.36■■■□□ 2.93
LIG3-208ENST00000586407 FLRT1Q9NZU1 646 aa33.36■■■□□ 2.93
LIG3-208ENST00000586407 ZNFX1Q9P2E3 1918 aaKnown RBP33.36■■■□□ 2.93
LIG3-208ENST00000586407 ZNF236Q9UL36 1845 aa33.35■■■□□ 2.93
LIG3-208ENST00000586407 MKI67P46013 3256 aaKnown RBP33.35■■■□□ 2.93
LIG3-208ENST00000586407 NCAPG2Q86XI2 1143 aa33.35■■■□□ 2.93
LIG3-208ENST00000586407 NPLOC4Q8TAT6 608 aa33.35■■■□□ 2.93
LIG3-208ENST00000586407 TSPY2A6NKD2 308 aa33.34■■■□□ 2.93
LIG3-208ENST00000586407 TFRCP02786 760 aaKnown RBP33.34■■■□□ 2.93
LIG3-208ENST00000586407 GSPT1P15170 499 aaKnown RBP33.34■■■□□ 2.93
LIG3-208ENST00000586407 MKL1Q969V6 931 aa33.34■■■□□ 2.93
LIG3-208ENST00000586407 HMX1Q9NP08 348 aaPredicted RBP33.34■■■□□ 2.93
LIG3-208ENST00000586407 TOMM22Q9NS69 142 aa33.34■■■□□ 2.93
LIG3-208ENST00000586407 ADAMTS5Q9UNA0 930 aa33.34■■■□□ 2.93
LIG3-208ENST00000586407 RPTORQ8N122 1335 aa33.33■■■□□ 2.93
LIG3-208ENST00000586407 VWA5AO00534 786 aa33.33■■■□□ 2.93
LIG3-208ENST00000586407 RANBP6O60518 1105 aaKnown RBP33.33■■■□□ 2.93
LIG3-208ENST00000586407 CACNB2Q08289 660 aaPredicted RBP33.33■■■□□ 2.93
LIG3-208ENST00000586407 RRP12Q5JTH9 1297 aaKnown RBP33.33■■■□□ 2.93
LIG3-208ENST00000586407 MAP3K21Q5TCX8 1036 aa33.33■■■□□ 2.93
LIG3-208ENST00000586407 PRPF38BQ5VTL8 546 aaKnown RBP33.33■■■□□ 2.93
LIG3-208ENST00000586407 SHCBP1Q8NEM2 672 aa33.33■■■□□ 2.93
LIG3-208ENST00000586407 SLF1Q9BQI6 1058 aa33.33■■■□□ 2.93
LIG3-208ENST00000586407 NBPF3Q9H094 633 aa33.33■■■□□ 2.93
LIG3-208ENST00000586407 IL17RBQ9NRM6 502 aa33.33■■■□□ 2.93
LIG3-208ENST00000586407 LAMA4Q16363 1823 aa33.32■■■□□ 2.93
LIG3-208ENST00000586407 TTC22Q5TAA0 569 aa33.32■■■□□ 2.92
LIG3-208ENST00000586407 REPS2Q8NFH8 660 aa33.32■■■□□ 2.92
LIG3-208ENST00000586407 FARP2O94887 1054 aaPredicted RBP33.31■■■□□ 2.92
LIG3-208ENST00000586407 ADORA2AP29274 412 aa33.31■■■□□ 2.92
LIG3-208ENST00000586407 CCND3P30281 292 aaPredicted RBP33.31■■■□□ 2.92
LIG3-208ENST00000586407 SLFN13Q68D06 897 aa33.31■■■□□ 2.92
LIG3-208ENST00000586407 RASGRP2Q7LDG7 609 aa33.31■■■□□ 2.92
LIG3-208ENST00000586407 UBE2Q1Q7Z7E8 422 aa33.31■■■□□ 2.92
LIG3-208ENST00000586407 ZMYM6O95789 1325 aa33.3■■■□□ 2.92
LIG3-208ENST00000586407 ORC4O43929 436 aa33.3■■■□□ 2.92
LIG3-208ENST00000586407 TBC1D10CQ8IV04 446 aa33.3■■■□□ 2.92
LIG3-208ENST00000586407 TRMT44Q8IYL2 757 aaKnown RBP33.3■■■□□ 2.92
LIG3-208ENST00000586407 CRISPLD2Q9H0B8 497 aa33.3■■■□□ 2.92
LIG3-208ENST00000586407 ISY1Q9ULR0 285 aaKnown RBP33.3■■■□□ 2.92
LIG3-208ENST00000586407 STX8Q9UNK0 236 aa33.3■■■□□ 2.92
LIG3-208ENST00000586407 GMCL1P1Q8NEA9 526 aa33.29■■■□□ 2.92
LIG3-208ENST00000586407 KIFC2Q96AC6 838 aa33.29■■■□□ 2.92
LIG3-208ENST00000586407 IL25Q9H293 177 aa33.29■■■□□ 2.92
LIG3-208ENST00000586407 MROH8Q9H579 483 aa33.29■■■□□ 2.92
LIG3-208ENST00000586407 ZNF214Q9UL59 606 aaPredicted RBP33.29■■■□□ 2.92
LIG3-208ENST00000586407 FRMPD3Q5JV73 1810 aa33.28■■■□□ 2.92
LIG3-208ENST00000586407 COBLO75128 1261 aa33.28■■■□□ 2.92
LIG3-208ENST00000586407 HOXC6P09630 235 aa33.28■■■□□ 2.92
LIG3-208ENST00000586407 FGRP09769 529 aa33.28■■■□□ 2.92
LIG3-208ENST00000586407 DPP9Q86TI2 863 aa33.28■■■□□ 2.92
LIG3-208ENST00000586407 RIOX2Q8IUF8 465 aa33.28■■■□□ 2.92
LIG3-208ENST00000586407 MTMR7Q9Y216 660 aa33.28■■■□□ 2.92
LIG3-208ENST00000586407 PLXNA1Q9UIW2 1896 aa33.27■■■□□ 2.92
LIG3-208ENST00000586407 CYP2C19P33261 490 aa33.27■■■□□ 2.92
LIG3-208ENST00000586407 STAT3P40763 770 aa33.27■■■□□ 2.92
LIG3-208ENST00000586407 MFAP1P55081 439 aaKnown RBP33.27■■■□□ 2.92
LIG3-208ENST00000586407 DIS3LQ8TF46 1054 aaKnown RBP33.27■■■□□ 2.92
LIG3-208ENST00000586407 HIP1O00291 1037 aa33.26■■■□□ 2.91
LIG3-208ENST00000586407 SLC4A3P48751 1232 aa33.26■■■□□ 2.91
LIG3-208ENST00000586407 SYNPO2Q9UMS6 1093 aa33.26■■■□□ 2.91
LIG3-208ENST00000586407 STRNO43815 780 aa33.25■■■□□ 2.91
LIG3-208ENST00000586407 BMP3P12645 472 aa33.25■■■□□ 2.91
LIG3-208ENST00000586407 MFSD14CQ5VZR4 134 aa33.25■■■□□ 2.91
LIG3-208ENST00000586407 CPXCR1Q8N123 301 aa33.25■■■□□ 2.91
LIG3-208ENST00000586407 PRPF38AQ8NAV1 312 aaKnown RBP33.25■■■□□ 2.91
LIG3-208ENST00000586407 ALPK3Q96L96 1907 aa33.24■■■□□ 2.91
LIG3-208ENST00000586407 SLC25A27O95847 323 aa33.24■■■□□ 2.91
LIG3-208ENST00000586407 MCCP23508 829 aa33.24■■■□□ 2.91
LIG3-208ENST00000586407 FEM1BQ9UK73 627 aa33.24■■■□□ 2.91
LIG3-208ENST00000586407 NEDD4P46934 1319 aa33.24■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms