RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 PRELPP51888 382 aa12.88□□□□□ -0.35
LIG3-204ENST00000585740 NPY5RQ15761 445 aa12.88□□□□□ -0.35
LIG3-204ENST00000585740 TTC38Q5R3I4 469 aa12.88□□□□□ -0.35
LIG3-204ENST00000585740 KRBA2Q6ZNG9 492 aa12.88□□□□□ -0.35
LIG3-204ENST00000585740 C11orf57Q6ZUT1 292 aaPredicted RBP12.88□□□□□ -0.35
LIG3-204ENST00000585740 BLIDQ8IZY5 108 aa12.88□□□□□ -0.35
LIG3-204ENST00000585740 CNNM3Q8NE01 707 aa12.88□□□□□ -0.35
LIG3-204ENST00000585740 SHISA4Q96DD7 197 aa12.88□□□□□ -0.35
LIG3-204ENST00000585740 EHD4Q9H223 541 aa12.88□□□□□ -0.35
LIG3-204ENST00000585740 TUBE1Q9UJT0 475 aa12.88□□□□□ -0.35
LIG3-204ENST00000585740 PCDHA4Q9UN74 947 aa12.88□□□□□ -0.35
LIG3-204ENST00000585740 GREB1LQ9C091 1923 aaPredicted RBP12.88□□□□□ -0.35
LIG3-204ENST00000585740 ECE2O60344 883 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 ZNF75DP51815 510 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 KIAA2012Q0VF49 1180 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 PICALMQ13492 652 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 ASPRV1Q53RT3 343 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 DACT2Q5SW24 774 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 CDC42EP5Q6NZY7 148 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 CCDC17Q96LX7 622 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 CLIC6Q96NY7 704 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 TRIM5Q9C035 493 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 DHX36Q9H2U1 1008 aaKnown RBP12.87□□□□□ -0.35
LIG3-204ENST00000585740 SERPINB13Q9UIV8 391 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 SERPINA10Q9UK55 444 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 MYH4Q9Y623 1939 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 SCN9AQ15858 1988 aa12.87□□□□□ -0.35
LIG3-204ENST00000585740 ADAMTSL1Q8N6G6 1762 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 IGKV6D-41A0A0C4DH26 115 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 hCG_1642624A0A1W2PR95 340 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 KLRF2D3W0D1 207 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 MYO1BO43795 1136 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 APOBEC3HQ6NTF7 200 aaKnown RBP12.86□□□□□ -0.35
LIG3-204ENST00000585740 OLFM4Q6UX06 510 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 PLA2G4DQ86XP0 818 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 STAG2Q8N3U4 1231 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 RBM46Q8TBY0 533 aaKnown RBP12.86□□□□□ -0.35
LIG3-204ENST00000585740 C7orf43Q8WVR3 580 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 RRP36Q96EU6 259 aaKnown RBP12.86□□□□□ -0.35
LIG3-204ENST00000585740 CEP95Q96GE4 821 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 DBNDD1Q9H9R9 158 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 BARHL2Q9NY43 387 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 MTMR4Q9NYA4 1195 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 SEC63Q9UGP8 760 aaKnown RBP12.86□□□□□ -0.35
LIG3-204ENST00000585740 DACH1Q9UI36 760 aa12.86□□□□□ -0.35
LIG3-204ENST00000585740 WDR90Q96KV7 1748 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 CCDC194A0A1B0GVG4 234 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 STXBP3O00186 592 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 IKBKBO14920 756 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 AP5Z1O43299 807 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 TTLL1O95922 423 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 ATP2B1P20020 1258 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 GNA11P29992 359 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 SCNN1DP51172 638 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 ATP2C1P98194 919 aaPredicted RBP12.85□□□□□ -0.35
LIG3-204ENST00000585740 ARL6IP4Q66PJ3 421 aaKnown RBP12.85□□□□□ -0.35
LIG3-204ENST00000585740 ARHGAP27Q6ZUM4 889 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 DHX40Q8IX18 779 aaKnown RBP12.85□□□□□ -0.35
LIG3-204ENST00000585740 TRIML1Q8N9V2 468 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 MRFAP1L1Q96HT8 127 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 IDI2Q9BXS1 227 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 VPS33BQ9H267 617 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 DDX4Q9NQI0 724 aaKnown RBP12.85□□□□□ -0.35
LIG3-204ENST00000585740 BCS1LQ9Y276 419 aa12.85□□□□□ -0.35
LIG3-204ENST00000585740 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.85□□□□□ -0.35
LIG3-204ENST00000585740 COL2A1P02458 1487 aaPredicted RBP12.85□□□□□ -0.35
LIG3-204ENST00000585740 KIF13BQ9NQT8 1826 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 ESYT2A0FGR8 921 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 CHRNA5P30532 468 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 ORC2Q13416 577 aaPredicted RBP12.84□□□□□ -0.35
LIG3-204ENST00000585740 DHX8Q14562 1220 aaKnown RBP12.84□□□□□ -0.35
LIG3-204ENST00000585740 ZNF174Q15697 407 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 LONRF3Q496Y0 759 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 CCDC93Q567U6 631 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 CT47A1Q5JQC4 288 aaPredicted RBP12.84□□□□□ -0.35
LIG3-204ENST00000585740 SOGA3Q5TF21 947 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 WWC2Q6AWC2 1192 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 PIK3AP1Q6ZUJ8 805 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 KRT25Q7Z3Z0 450 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 DRC7Q8IY82 874 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 RTKN2Q8IZC4 609 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 AOPEPQ8N6M6 819 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 CSRNP2Q9H175 543 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 C6orf50Q9HD87 102 aa12.84□□□□□ -0.35
LIG3-204ENST00000585740 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.84□□□□□ -0.35
LIG3-204ENST00000585740 PCNTO95613 3336 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 FAM205CA6NFA0 338 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 M0R2N6 131 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 LAD1O00515 517 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 POLR2DO15514 142 aaKnown RBP12.83□□□□□ -0.36
LIG3-204ENST00000585740 CYTH3O43739 400 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 SMC2O95347 1197 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 SNHG28P0DPA3 235 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 AKR1B1P15121 316 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 SHMT1P34896 483 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 NAPAP54920 295 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 PTGDRQ13258 359 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 POSTNQ15063 836 aa12.83□□□□□ -0.36
LIG3-204ENST00000585740 EARS2Q5JPH6 523 aaKnown RBP12.83□□□□□ -0.36
LIG3-204ENST00000585740 PPP1R18Q6NYC8 613 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms