RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 SPATC1LQ9H0A9 340 aa18.05■□□□□ 0.48
CLIP3-202ENST00000585466 GOPCQ9HD26 462 aa18.05■□□□□ 0.48
CLIP3-202ENST00000585466 BIN2Q9UBW5 565 aaPredicted RBP18.05■□□□□ 0.48
CLIP3-202ENST00000585466 ZNFX1Q9P2E3 1918 aaKnown RBP18.04■□□□□ 0.48
CLIP3-202ENST00000585466 PTPREP23469 700 aa18.04■□□□□ 0.48
CLIP3-202ENST00000585466 NOVP48745 357 aa18.04■□□□□ 0.48
CLIP3-202ENST00000585466 CCNA1P78396 465 aa18.04■□□□□ 0.48
CLIP3-202ENST00000585466 PDE4BQ07343 736 aa18.04■□□□□ 0.48
CLIP3-202ENST00000585466 ZNF444Q8N0Y2 327 aaPredicted RBP18.04■□□□□ 0.48
CLIP3-202ENST00000585466 MB21D1Q8N884 522 aa18.04■□□□□ 0.48
CLIP3-202ENST00000585466 U2AF1L4Q8WU68 220 aaKnown RBP18.04■□□□□ 0.48
CLIP3-202ENST00000585466 IL25Q9H293 177 aa18.04■□□□□ 0.48
CLIP3-202ENST00000585466 ZNF287Q9HBT7 754 aa18.04■□□□□ 0.48
CLIP3-202ENST00000585466 IL17RBQ9NRM6 502 aa18.04■□□□□ 0.48
CLIP3-202ENST00000585466 CLIP2Q9UDT6 1046 aa18.04■□□□□ 0.48
CLIP3-202ENST00000585466 PPP1R9AQ9ULJ8 1098 aa18.04■□□□□ 0.48
CLIP3-202ENST00000585466 SYNPO2Q9UMS6 1093 aa18.04■□□□□ 0.48
CLIP3-202ENST00000585466 SLC15A5A6NIM6 579 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 F5H6K3 240 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 ORC4O43929 436 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 HOXC6P09630 235 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 TFAP4Q01664 338 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 KLRC3Q07444 240 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 MAP2K5Q13163 448 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 TMEM132BQ14DG7 1078 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 SHCBP1Q8NEM2 672 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 APBA2Q99767 749 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 CRISPLD2Q9H0B8 497 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 FLRT1Q9NZU1 646 aa18.03■□□□□ 0.48
CLIP3-202ENST00000585466 FRMPD3Q5JV73 1810 aa18.02■□□□□ 0.48
CLIP3-202ENST00000585466 NMT2O60551 498 aa18.02■□□□□ 0.48
CLIP3-202ENST00000585466 SGPL1O95470 568 aa18.02■□□□□ 0.48
CLIP3-202ENST00000585466 TTLL1O95922 423 aa18.02■□□□□ 0.48
CLIP3-202ENST00000585466 ERCC3P19447 782 aa18.02■□□□□ 0.48
CLIP3-202ENST00000585466 RGS2P41220 211 aa18.02■□□□□ 0.48
CLIP3-202ENST00000585466 TTC22Q5TAA0 569 aa18.02■□□□□ 0.48
CLIP3-202ENST00000585466 LRRC47Q8N1G4 583 aaKnown RBP18.02■□□□□ 0.48
CLIP3-202ENST00000585466 GMCL1P1Q8NEA9 526 aa18.02■□□□□ 0.48
CLIP3-202ENST00000585466 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.02■□□□□ 0.48
CLIP3-202ENST00000585466 ZNF214Q9UL59 606 aaPredicted RBP18.02■□□□□ 0.48
CLIP3-202ENST00000585466 CEP290O15078 2479 aa18.01■□□□□ 0.47
CLIP3-202ENST00000585466 VWA5AO00534 786 aa18.01■□□□□ 0.47
CLIP3-202ENST00000585466 SLC3A2P08195 630 aaKnown RBP18.01■□□□□ 0.47
CLIP3-202ENST00000585466 TSPY3P0CV98 308 aa18.01■□□□□ 0.47
CLIP3-202ENST00000585466 TSPY8P0CW00 308 aa18.01■□□□□ 0.47
CLIP3-202ENST00000585466 TBC1D10CQ8IV04 446 aa18.01■□□□□ 0.47
CLIP3-202ENST00000585466 NPLOC4Q8TAT6 608 aa18.01■□□□□ 0.47
CLIP3-202ENST00000585466 DEFB118Q96PH6 123 aa18.01■□□□□ 0.47
CLIP3-202ENST00000585466 ALPK3Q96L96 1907 aa18.01■□□□□ 0.47
CLIP3-202ENST00000585466 RPTORQ8N122 1335 aa18■□□□□ 0.47
CLIP3-202ENST00000585466 PRKAR2AP13861 404 aaKnown RBP18■□□□□ 0.47
CLIP3-202ENST00000585466 CACNB2Q08289 660 aaPredicted RBP18■□□□□ 0.47
CLIP3-202ENST00000585466 CWC27Q6UX04 472 aaKnown RBP18■□□□□ 0.47
CLIP3-202ENST00000585466 RASGRP2Q7LDG7 609 aa18■□□□□ 0.47
CLIP3-202ENST00000585466 COBLO75128 1261 aa17.99■□□□□ 0.47
CLIP3-202ENST00000585466 ZKSCAN1P17029 563 aaPredicted RBP17.99■□□□□ 0.47
CLIP3-202ENST00000585466 MNX1P50219 401 aaPredicted RBP17.99■□□□□ 0.47
CLIP3-202ENST00000585466 WDR78Q5VTH9 848 aa17.99■□□□□ 0.47
CLIP3-202ENST00000585466 PRPF38BQ5VTL8 546 aaKnown RBP17.99■□□□□ 0.47
CLIP3-202ENST00000585466 RIOX2Q8IUF8 465 aa17.99■□□□□ 0.47
CLIP3-202ENST00000585466 CCAR1Q8IX12 1150 aaKnown RBP17.99■□□□□ 0.47
CLIP3-202ENST00000585466 TRMT44Q8IYL2 757 aaKnown RBP17.99■□□□□ 0.47
CLIP3-202ENST00000585466 SLF1Q9BQI6 1058 aa17.99■□□□□ 0.47
CLIP3-202ENST00000585466 PLXNA1Q9UIW2 1896 aa17.99■□□□□ 0.47
CLIP3-202ENST00000585466 RAD21O60216 631 aa17.98■□□□□ 0.47
CLIP3-202ENST00000585466 ADORA2AP29274 412 aa17.98■□□□□ 0.47
CLIP3-202ENST00000585466 HAND2P61296 217 aa17.98■□□□□ 0.47
CLIP3-202ENST00000585466 STAG1Q8WVM7 1258 aa17.98■□□□□ 0.47
CLIP3-202ENST00000585466 MROH8Q9H579 483 aa17.98■□□□□ 0.47
CLIP3-202ENST00000585466 DIAPH3Q9NSV4 1193 aa17.98■□□□□ 0.47
CLIP3-202ENST00000585466 TSPY2A6NKD2 308 aa17.97■□□□□ 0.47
CLIP3-202ENST00000585466 STRNO43815 780 aa17.97■□□□□ 0.47
CLIP3-202ENST00000585466 CCND3P30281 292 aaPredicted RBP17.97■□□□□ 0.47
CLIP3-202ENST00000585466 PLS1Q14651 629 aa17.97■□□□□ 0.47
CLIP3-202ENST00000585466 SLFN13Q68D06 897 aa17.97■□□□□ 0.47
CLIP3-202ENST00000585466 SAMD1Q6SPF0 538 aaPredicted RBP17.97■□□□□ 0.47
CLIP3-202ENST00000585466 ABRAQ8N0Z2 381 aa17.97■□□□□ 0.47
CLIP3-202ENST00000585466 HMX1Q9NP08 348 aaPredicted RBP17.97■□□□□ 0.47
CLIP3-202ENST00000585466 NEDD4P46934 1319 aa17.97■□□□□ 0.47
CLIP3-202ENST00000585466 HIP1O00291 1037 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 ATP2A1O14983 1001 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 RANBP6O60518 1105 aaKnown RBP17.96■□□□□ 0.47
CLIP3-202ENST00000585466 AKNAD1Q5T1N1 836 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 LHX8Q68G74 356 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 RCSD1Q6JBY9 416 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 NCAPG2Q86XI2 1143 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 PRPF38AQ8NAV1 312 aaKnown RBP17.96■□□□□ 0.47
CLIP3-202ENST00000585466 TRPV1Q8NER1 839 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 GMCL1Q96IK5 515 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 DSCC1Q9BVC3 393 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 SLC38A10Q9HBR0 1119 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 TCP11L1Q9NUJ3 509 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 RIPK3Q9Y572 518 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 IVNS1ABPQ9Y6Y0 642 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 SMCHD1A6NHR9 2005 aa17.96■□□□□ 0.47
CLIP3-202ENST00000585466 FARP2O94887 1054 aaPredicted RBP17.95■□□□□ 0.46
CLIP3-202ENST00000585466 SLC25A27O95847 323 aa17.95■□□□□ 0.46
CLIP3-202ENST00000585466 BMP3P12645 472 aa17.95■□□□□ 0.46
CLIP3-202ENST00000585466 STAT3P40763 770 aa17.95■□□□□ 0.46
CLIP3-202ENST00000585466 MFAP1P55081 439 aaKnown RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms