RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 RCOR1Q9UKL0 485 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 PPP2R3BQ9Y5P8 575 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 GOLGA6L3A6NEY3 463 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 SMIM22K7EJ46 135 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 FIBPO43427 364 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 PPP1R12BO60237 982 aaPredicted RBP12.01□□□□□ -0.49
LIG3-203ENST00000585370 ENTPD3O75355 529 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 USP2O75604 605 aaPredicted RBP12.01□□□□□ -0.49
LIG3-203ENST00000585370 RXRAP19793 462 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 NOVP48745 357 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 RBM5P52756 815 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIG3-203ENST00000585370 ZNF445P59923 1031 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 GABPAQ06546 454 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 RASA3Q14644 834 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 SUPT20HL1Q3ZLR7 823 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 KRT40Q6A162 431 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 RCSD1Q6JBY9 416 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 NBPF11Q86T75 865 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 FOXP4Q8IVH2 680 aaPredicted RBP12.01□□□□□ -0.49
LIG3-203ENST00000585370 CCDC144CPQ8IYA2 1237 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 GZF1Q9H116 711 aaPredicted RBP12.01□□□□□ -0.49
LIG3-203ENST00000585370 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.01□□□□□ -0.49
LIG3-203ENST00000585370 SERPINB13Q9UIV8 391 aa12.01□□□□□ -0.49
LIG3-203ENST00000585370 NAV1Q8NEY1 1877 aa12□□□□□ -0.49
LIG3-203ENST00000585370 DTNBO60941 627 aa12□□□□□ -0.49
LIG3-203ENST00000585370 ZBTB48P10074 688 aaPredicted RBP12□□□□□ -0.49
LIG3-203ENST00000585370 TOP1P11387 765 aaKnown RBP12□□□□□ -0.49
LIG3-203ENST00000585370 U2AF2P26368 475 aaKnown RBP eCLIP12□□□□□ -0.49
LIG3-203ENST00000585370 SMARCA1P28370 1054 aa12□□□□□ -0.49
LIG3-203ENST00000585370 CAVIN1Q6NZI2 390 aaKnown RBP12□□□□□ -0.49
LIG3-203ENST00000585370 TMTC3Q6ZXV5 915 aa12□□□□□ -0.49
LIG3-203ENST00000585370 IFNL1Q8IU54 200 aa12□□□□□ -0.49
LIG3-203ENST00000585370 PNMA1Q8ND90 353 aa12□□□□□ -0.49
LIG3-203ENST00000585370 LEO1Q8WVC0 666 aaPredicted RBP12□□□□□ -0.49
LIG3-203ENST00000585370 PHKBQ93100 1093 aa12□□□□□ -0.49
LIG3-203ENST00000585370 WNK4Q96J92 1243 aa12□□□□□ -0.49
LIG3-203ENST00000585370 GDPD2Q9HCC8 539 aa12□□□□□ -0.49
LIG3-203ENST00000585370 IL17RBQ9NRM6 502 aa12□□□□□ -0.49
LIG3-203ENST00000585370 RTEL1Q9NZ71 1219 aa12□□□□□ -0.49
LIG3-203ENST00000585370 TMOD2Q9NZR1 351 aa12□□□□□ -0.49
LIG3-203ENST00000585370 TFIP11Q9UBB9 837 aaKnown RBP12□□□□□ -0.49
LIG3-203ENST00000585370 PI4KBQ9UBF8 816 aa12□□□□□ -0.49
LIG3-203ENST00000585370 ZNF70Q9UC06 446 aaPredicted RBP12□□□□□ -0.49
LIG3-203ENST00000585370 PLIN4Q96Q06 1357 aa12□□□□□ -0.49
LIG3-203ENST00000585370 ECM29Q5VYK3 1845 aa12□□□□□ -0.49
LIG3-203ENST00000585370 FSD2A1L4K1 749 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 MANSC4A6NHS7 340 aaPredicted RBP11.99□□□□□ -0.49
LIG3-203ENST00000585370 UNCXA6NJT0 531 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 IGF2BP3O00425 579 aaKnown RBP eCLIP11.99□□□□□ -0.49
LIG3-203ENST00000585370 FKTNO75072 461 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 YEATS4O95619 227 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 GJA5P36382 358 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 INHBEP58166 350 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 GUCY1B3Q02153 619 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 FUT2Q10981 343 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 PICALMQ13492 652 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 GNL2Q13823 731 aaKnown RBP11.99□□□□□ -0.49
LIG3-203ENST00000585370 GRM4Q14833 912 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 SPDYE2Q495Y8 402 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 CHAMP1Q96JM3 812 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 FOXP1Q9H334 677 aaPredicted RBP11.99□□□□□ -0.49
LIG3-203ENST00000585370 TDRD3Q9H7E2 651 aaKnown RBP11.99□□□□□ -0.49
LIG3-203ENST00000585370 DDX4Q9NQI0 724 aaKnown RBP11.99□□□□□ -0.49
LIG3-203ENST00000585370 POLR3EQ9NVU0 708 aa11.99□□□□□ -0.49
LIG3-203ENST00000585370 NMT2O60551 498 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 GADD45BO75293 160 aaPredicted RBP11.98□□□□□ -0.49
LIG3-203ENST00000585370 SLC34A2O95436 690 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 ALDH1A1P00352 501 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 MMP1P03956 469 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 IREB2P48200 963 aaKnown RBP11.98□□□□□ -0.49
LIG3-203ENST00000585370 MRE11P49959 708 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 EVX2Q03828 476 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 ZSCAN23Q3MJ62 389 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 CCDC183Q5T5S1 534 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 FKBP1CQ5VVH2 108 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 MYSM1Q5VVJ2 828 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 CDAN1Q8IWY9 1227 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 KCNG4Q8TDN1 519 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 TEPSINQ96N21 525 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 TMEM47Q9BQJ4 181 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 BRMS1Q9HCU9 246 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 SH3GLB2Q9NR46 395 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 MYH1P12882 1939 aa11.98□□□□□ -0.49
LIG3-203ENST00000585370 COL2A1P02458 1487 aaPredicted RBP11.97□□□□□ -0.49
LIG3-203ENST00000585370 NASPP49321 788 aaPredicted RBP11.97□□□□□ -0.49
LIG3-203ENST00000585370 FOSBP53539 338 aa11.97□□□□□ -0.49
LIG3-203ENST00000585370 FAM173BQ6P4H8 233 aa11.97□□□□□ -0.49
LIG3-203ENST00000585370 FBXO46Q6PJ61 603 aaPredicted RBP11.97□□□□□ -0.49
LIG3-203ENST00000585370 METTL16Q86W50 562 aaKnown RBP11.97□□□□□ -0.49
LIG3-203ENST00000585370 ANKRD13AQ8IZ07 590 aa11.97□□□□□ -0.49
LIG3-203ENST00000585370 SLC44A5Q8NCS7 719 aa11.97□□□□□ -0.49
LIG3-203ENST00000585370 PTPN18Q99952 460 aa11.97□□□□□ -0.49
LIG3-203ENST00000585370 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.97□□□□□ -0.49
LIG3-203ENST00000585370 TRIM34Q9BYJ4 488 aa11.97□□□□□ -0.49
LIG3-203ENST00000585370 MTMR4Q9NYA4 1195 aa11.97□□□□□ -0.49
LIG3-203ENST00000585370 TMEM63CQ9P1W3 806 aa11.97□□□□□ -0.49
LIG3-203ENST00000585370 V9GY48 417 aaPredicted RBP11.97□□□□□ -0.49
LIG3-203ENST00000585370 TCHHQ07283 1943 aa11.97□□□□□ -0.49
LIG3-203ENST00000585370 FOCADQ5VW36 1801 aa11.97□□□□□ -0.49
LIG3-203ENST00000585370 CDK5RAP2Q96SN8 1893 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms