RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	BPNT1	O95861	308 aa		6.57	□□□□□ -1.36
SS18-223	ENST00000583595	TAL1	P17542	331 aa	Predicted RBP	6.57	□□□□□ -1.36
SS18-223	ENST00000583595	FAM50A	Q14320	339 aa	Known RBP	6.57	□□□□□ -1.36
SS18-223	ENST00000583595	TMED8	Q6PL24	325 aa	Predicted RBP	6.57	□□□□□ -1.36
SS18-223	ENST00000583595	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	6.57	□□□□□ -1.36
SS18-223	ENST00000583595	NFXL1	Q6ZNB6	911 aa		6.57	□□□□□ -1.36
SS18-223	ENST00000583595	C12orf40	Q86WS4	652 aa		6.57	□□□□□ -1.36
SS18-223	ENST00000583595	CCDC146	Q8IYE0	955 aa		6.57	□□□□□ -1.36
SS18-223	ENST00000583595	ST13P5	Q8NFI4	369 aa	Predicted RBP	6.57	□□□□□ -1.36
SS18-223	ENST00000583595	DUSP23	Q9BVJ7	150 aa		6.57	□□□□□ -1.36
SS18-223	ENST00000583595	KRTAP9-9	Q9BYP9	154 aa		6.57	□□□□□ -1.36
SS18-223	ENST00000583595	KRTAP9-4	Q9BYQ2	154 aa		6.57	□□□□□ -1.36
SS18-223	ENST00000583595	PICK1	Q9NRD5	415 aa		6.57	□□□□□ -1.36
SS18-223	ENST00000583595	PCDHA4	Q9UN74	947 aa		6.57	□□□□□ -1.36
SS18-223	ENST00000583595		A0A087X0B3	334 aa		6.56	□□□□□ -1.36
SS18-223	ENST00000583595	KRTAP4-8	A0A0G2JLE6	195 aa		6.56	□□□□□ -1.36
SS18-223	ENST00000583595	IRS4	O14654	1257 aa	Predicted RBP	6.56	□□□□□ -1.36
SS18-223	ENST00000583595	ATE1	O95260	518 aa		6.56	□□□□□ -1.36
SS18-223	ENST00000583595	TM4SF20	Q53R12	229 aa		6.56	□□□□□ -1.36
SS18-223	ENST00000583595	GORAB	Q5T7V8	394 aa		6.56	□□□□□ -1.36
SS18-223	ENST00000583595	THNSL2	Q86YJ6	484 aa		6.56	□□□□□ -1.36
SS18-223	ENST00000583595	TP53INP2	Q8IXH6	220 aa		6.56	□□□□□ -1.36
SS18-223	ENST00000583595	KRTAP4-12	Q9BQ66	201 aa		6.56	□□□□□ -1.36
SS18-223	ENST00000583595	ADGRE2	Q9UHX3	823 aa		6.56	□□□□□ -1.36
SS18-223	ENST00000583595	PCDHB10	Q9UN67	800 aa		6.56	□□□□□ -1.36
SS18-223	ENST00000583595	WASHC2C	Q9Y4E1	1318 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	UPK3BL1	B0FP48	263 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	UPK3BL2	E5RIL1	263 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	L1CAM	P32004	1257 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	TBX4	P57082	545 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	NFKB2	Q00653	900 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	EXOSC10	Q01780	885 aa	Known RBP	6.55	□□□□□ -1.36
SS18-223	ENST00000583595	RPL6	Q02878	288 aa	Known RBP	6.55	□□□□□ -1.36
SS18-223	ENST00000583595	ZYX	Q15942	572 aa	Known RBP	6.55	□□□□□ -1.36
SS18-223	ENST00000583595	AXDND1	Q5T1B0	1012 aa	Predicted RBP	6.55	□□□□□ -1.36
SS18-223	ENST00000583595	SCARA3	Q6AZY7	606 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	NIM1K	Q8IY84	436 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	SYNPO	Q8N3V7	929 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	TOP6BL	Q8N6T0	577 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	FAM181A	Q8N9Y4	354 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	ZSWIM2	Q8NEG5	633 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	FLCN	Q8NFG4	579 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	NINJ1	Q92982	152 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	GAL3ST3	Q96A11	431 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	SPATA9	Q9BWV2	254 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	MAGEC2	Q9UBF1	373 aa	Predicted RBP	6.55	□□□□□ -1.36
SS18-223	ENST00000583595	PLAA	Q9Y263	795 aa		6.55	□□□□□ -1.36
SS18-223	ENST00000583595	LTBP3	Q9NS15	1303 aa		6.54	□□□□□ -1.36
SS18-223	ENST00000583595	FANCG	O15287	622 aa		6.54	□□□□□ -1.36
SS18-223	ENST00000583595	NTF4	P34130	210 aa		6.54	□□□□□ -1.36
SS18-223	ENST00000583595	RING1	Q06587	406 aa		6.54	□□□□□ -1.36
SS18-223	ENST00000583595	FOXB2	Q5VYV0	432 aa		6.54	□□□□□ -1.36
SS18-223	ENST00000583595	WDR75	Q8IWA0	830 aa	Known RBP	6.54	□□□□□ -1.36
SS18-223	ENST00000583595	PLD6	Q8N2A8	252 aa	Known RBP	6.54	□□□□□ -1.36
SS18-223	ENST00000583595	C19orf47	Q8N9M1	422 aa	Known RBP	6.54	□□□□□ -1.36
SS18-223	ENST00000583595	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	6.54	□□□□□ -1.36
SS18-223	ENST00000583595	MORC4	Q8TE76	937 aa		6.54	□□□□□ -1.36
SS18-223	ENST00000583595	CHAC2	Q8WUX2	184 aa		6.54	□□□□□ -1.36
SS18-223	ENST00000583595	ELMO3	Q96BJ8	720 aa		6.54	□□□□□ -1.36
SS18-223	ENST00000583595	PAK6	Q9NQU5	681 aa	Predicted RBP	6.54	□□□□□ -1.36
SS18-223	ENST00000583595	TCEAL9	Q9UHQ7	104 aa		6.54	□□□□□ -1.36
SS18-223	ENST00000583595	PRC1	O43663	620 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	ADCY3	O60266	1144 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	GUCY2C	P25092	1073 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	STAT3	P40763	770 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	PABPC4	Q13310	644 aa	Known RBP eCLIP	6.53	□□□□□ -1.36
SS18-223	ENST00000583595	INPP5A	Q14642	412 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	ZBTB37	Q5TC79	503 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	UNC5A	Q6ZN44	842 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	CDC37L1	Q7L3B6	337 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	UBE3D	Q7Z6J8	389 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	NETO1	Q8TDF5	533 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	BCL7C	Q8WUZ0	217 aa	Predicted RBP	6.53	□□□□□ -1.36
SS18-223	ENST00000583595	MFSD3	Q96ES6	412 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	TM9SF2	Q99805	663 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	CAAP1	Q9H8G2	361 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	SLC5A6	Q9Y289	635 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	CORIN	Q9Y5Q5	1042 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595		U3KQE9	123 aa		6.53	□□□□□ -1.36
SS18-223	ENST00000583595	FAM86C2P	A6NEL3	165 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	BTBD11	A6QL63	1104 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	PAX4	O43316	350 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	ALDH1L1	O75891	902 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	ACR	P10323	421 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	BNIP3	Q12983	259 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	TMEM67	Q5HYA8	995 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	DIEXF	Q68CQ4	756 aa	Known RBP	6.52	□□□□□ -1.37
SS18-223	ENST00000583595	LRFN4	Q6PJG9	635 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	VHLL	Q6RSH7	139 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	ARHGAP27	Q6ZUM4	889 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	EEPD1	Q7L9B9	569 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	CCAR1	Q8IX12	1150 aa	Known RBP	6.52	□□□□□ -1.37
SS18-223	ENST00000583595	STK11IP	Q8N1F8	1099 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	AGBL5	Q8NDL9	886 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	ZNF669	Q96BR6	464 aa	Predicted RBP	6.52	□□□□□ -1.37
SS18-223	ENST00000583595	C8orf48	Q96LL4	319 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	CLUHP3	Q96NS8	147 aa		6.52	□□□□□ -1.37
SS18-223	ENST00000583595	GEMIN8	Q9NWZ8	242 aa	Known RBP	6.52	□□□□□ -1.37
SS18-223	ENST00000583595	GFRA2	O00451	464 aa		6.51	□□□□□ -1.37
SS18-223	ENST00000583595	PDE8A	O60658	829 aa		6.51	□□□□□ -1.37

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