RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 OTOP1Q7RTM1 612 aa12.56□□□□□ -0.4
SS18-221ENST00000582448 RPAP2Q8IXW5 612 aaPredicted RBP12.56□□□□□ -0.4
SS18-221ENST00000582448 SVOPQ8N4V2 548 aa12.56□□□□□ -0.4
SS18-221ENST00000582448 CLMNQ96JQ2 1002 aa12.56□□□□□ -0.4
SS18-221ENST00000582448 SRCIN1Q9C0H9 1055 aa12.56□□□□□ -0.4
SS18-221ENST00000582448 ZNF804BA4D1E1 1349 aa12.56□□□□□ -0.4
SS18-221ENST00000582448 CLRN2A0PK11 232 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 F6X3S4 739 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 PPP1R12BO60237 982 aaPredicted RBP12.55□□□□□ -0.4
SS18-221ENST00000582448 GNAI2P04899 355 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 RGS3P49796 1198 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 INHBEP58166 350 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 CRTC2Q53ET0 693 aaPredicted RBP12.55□□□□□ -0.4
SS18-221ENST00000582448 EFHC2Q5JST6 749 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 HABP4Q5JVS0 413 aaKnown RBP12.55□□□□□ -0.4
SS18-221ENST00000582448 SH3PXD2AQ5TCZ1 1133 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 UBE3BQ7Z3V4 1068 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 TSEN2Q8NCE0 465 aaKnown RBP12.55□□□□□ -0.4
SS18-221ENST00000582448 C1orf216Q8TAB5 229 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 CD99L2Q8TCZ2 262 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 DNAAF4Q8WXU2 420 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 CFHR5Q9BXR6 569 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 VEZTQ9HBM0 779 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 NDFIP2Q9NV92 336 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 PCDHAC2Q9Y5I4 1007 aa12.55□□□□□ -0.4
SS18-221ENST00000582448 SNAP23O00161 211 aa12.54□□□□□ -0.4
SS18-221ENST00000582448 IGF2BP3O00425 579 aaKnown RBP eCLIP12.54□□□□□ -0.4
SS18-221ENST00000582448 ARHGEF15O94989 841 aa12.54□□□□□ -0.4
SS18-221ENST00000582448 EN2P19622 333 aaPredicted RBP12.54□□□□□ -0.4
SS18-221ENST00000582448 MX2P20592 715 aa12.54□□□□□ -0.4
SS18-221ENST00000582448 RBM5P52756 815 aaKnown RBP eCLIP12.54□□□□□ -0.4
SS18-221ENST00000582448 TEAD4Q15561 434 aa12.54□□□□□ -0.4
SS18-221ENST00000582448 WNK4Q96J92 1243 aa12.54□□□□□ -0.4
SS18-221ENST00000582448 ANKRD2Q9GZV1 360 aa12.54□□□□□ -0.4
SS18-221ENST00000582448 TSPAN10Q9H1Z9 355 aaPredicted RBP12.54□□□□□ -0.4
SS18-221ENST00000582448 CD209Q9NNX6 404 aa12.54□□□□□ -0.4
SS18-221ENST00000582448 ZDHHC3Q9NYG2 299 aa12.54□□□□□ -0.4
SS18-221ENST00000582448 JAG2Q9Y219 1238 aa12.54□□□□□ -0.4
SS18-221ENST00000582448 NEURL1BA8MQ27 555 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 M0R2N6 131 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 BNIP3LO60238 219 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 TAF5LO75529 589 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 CELA2BP08218 269 aaPredicted RBP12.53□□□□□ -0.4
SS18-221ENST00000582448 UBTFL1P0CB47 393 aaPredicted RBP12.53□□□□□ -0.4
SS18-221ENST00000582448 NOS2P35228 1153 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 MMP14P50281 582 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 NBPF12Q5TAG4 269 aaPredicted RBP12.53□□□□□ -0.4
SS18-221ENST00000582448 OTUD7BQ6GQQ9 843 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 SMC5Q8IY18 1101 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 ERO1AQ96HE7 468 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 ZCCHC2Q9C0B9 1178 aaKnown RBP12.53□□□□□ -0.4
SS18-221ENST00000582448 C1orf115Q9H7X2 142 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 EFCC1Q9HA90 598 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 PTPN22Q9Y2R2 807 aa12.53□□□□□ -0.4
SS18-221ENST00000582448 A0A1W2PNR3 127 aa12.52□□□□□ -0.41
SS18-221ENST00000582448 MYO1BO43795 1136 aa12.52□□□□□ -0.41
SS18-221ENST00000582448 CHRNDQ07001 517 aa12.52□□□□□ -0.41
SS18-221ENST00000582448 PTK7Q13308 1070 aa12.52□□□□□ -0.41
SS18-221ENST00000582448 SUPT20HL1Q3ZLR7 823 aa12.52□□□□□ -0.41
SS18-221ENST00000582448 CFAP100Q494V2 611 aa12.52□□□□□ -0.41
SS18-221ENST00000582448 ANKRD44Q8N8A2 993 aa12.52□□□□□ -0.41
SS18-221ENST00000582448 ABHD17AQ96GS6 310 aa12.52□□□□□ -0.41
SS18-221ENST00000582448 ZBED3Q96IU2 234 aaPredicted RBP12.52□□□□□ -0.41
SS18-221ENST00000582448 ZMYND15Q9H091 742 aa12.52□□□□□ -0.41
SS18-221ENST00000582448 CHMP3Q9Y3E7 222 aa12.52□□□□□ -0.41
SS18-221ENST00000582448 ALDH1L1O75891 902 aa12.51□□□□□ -0.41
SS18-221ENST00000582448 ZBTB48P10074 688 aaPredicted RBP12.51□□□□□ -0.41
SS18-221ENST00000582448 IREB2P48200 963 aaKnown RBP12.51□□□□□ -0.41
SS18-221ENST00000582448 SP3Q02447 781 aa12.51□□□□□ -0.41
SS18-221ENST00000582448 CRHR2Q13324 411 aa12.51□□□□□ -0.41
SS18-221ENST00000582448 CERS5Q8N5B7 392 aa12.51□□□□□ -0.41
SS18-221ENST00000582448 ACDQ96AP0 544 aa12.51□□□□□ -0.41
SS18-221ENST00000582448 PRMT6Q96LA8 375 aaPredicted RBP12.51□□□□□ -0.41
SS18-221ENST00000582448 MEIS3Q99687 375 aa12.51□□□□□ -0.41
SS18-221ENST00000582448 HCN2Q9UL51 889 aa12.51□□□□□ -0.41
SS18-221ENST00000582448 ANKRD18BA2A2Z9 1011 aa12.5□□□□□ -0.41
SS18-221ENST00000582448 USP2O75604 605 aaPredicted RBP12.5□□□□□ -0.41
SS18-221ENST00000582448 MAP3K11Q16584 847 aa12.5□□□□□ -0.41
SS18-221ENST00000582448 ARSJQ5FYB0 599 aaPredicted RBP12.5□□□□□ -0.41
SS18-221ENST00000582448 NLRP8Q86W28 1048 aa12.5□□□□□ -0.41
SS18-221ENST00000582448 ELP3Q9H9T3 547 aa12.5□□□□□ -0.41
SS18-221ENST00000582448 C9orf78Q9NZ63 289 aaPredicted RBP12.5□□□□□ -0.41
SS18-221ENST00000582448 PSME4Q14997 1843 aa12.5□□□□□ -0.41
SS18-221ENST00000582448 EML1O00423 815 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 NUCB1Q02818 461 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 GCKRQ14397 625 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 RASA3Q14644 834 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 SLC4A8Q2Y0W8 1093 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 BEND3Q5T5X7 828 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 ANKRD45Q5TZF3 282 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 CEP85Q6P2H3 762 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 CHD1LQ86WJ1 897 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 LINS1Q8NG48 757 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 PTPN18Q99952 460 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 VRTNQ9H8Y1 702 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 ATXN7L1Q9ULK2 861 aaPredicted RBP12.49□□□□□ -0.41
SS18-221ENST00000582448 PHF24Q9UPV7 400 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 RBM19Q9Y4C8 960 aaKnown RBP12.49□□□□□ -0.41
SS18-221ENST00000582448 PPP2R3BQ9Y5P8 575 aa12.49□□□□□ -0.41
SS18-221ENST00000582448 CACNA1FO60840 1977 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms