RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 EBF1Q9UH73 591 aa8.46□□□□□ -1.06
SMCHD1-202ENST00000577300 NBPF9Q3BBW0 867 aa8.45□□□□□ -1.06
SMCHD1-202ENST00000577300 LRRC56Q8IYG6 542 aaPredicted RBP8.45□□□□□ -1.06
SMCHD1-202ENST00000577300 USHBP1Q8N6Y0 703 aa8.45□□□□□ -1.06
SMCHD1-202ENST00000577300 ATG4CQ96DT6 458 aa8.45□□□□□ -1.06
SMCHD1-202ENST00000577300 G6PC3Q9BUM1 346 aa8.45□□□□□ -1.06
SMCHD1-202ENST00000577300 CD320Q9NPF0 282 aa8.45□□□□□ -1.06
SMCHD1-202ENST00000577300 YBX2Q9Y2T7 364 aaKnown RBP8.45□□□□□ -1.06
SMCHD1-202ENST00000577300 SEZ6Q53EL9 994 aa8.44□□□□□ -1.06
SMCHD1-202ENST00000577300 NLRC3Q7RTR2 1065 aa8.44□□□□□ -1.06
SMCHD1-202ENST00000577300 SIAH1Q8IUQ4 282 aa8.44□□□□□ -1.06
SMCHD1-202ENST00000577300 ZNF655Q8N720 491 aaPredicted RBP8.44□□□□□ -1.06
SMCHD1-202ENST00000577300 NT5C1AQ9BXI3 368 aa8.44□□□□□ -1.06
SMCHD1-202ENST00000577300 UBP1Q9NZI7 540 aa8.44□□□□□ -1.06
SMCHD1-202ENST00000577300 ETV2O00321 342 aaPredicted RBP8.43□□□□□ -1.06
SMCHD1-202ENST00000577300 POLR2BP30876 1174 aaKnown RBP8.43□□□□□ -1.06
SMCHD1-202ENST00000577300 ZNF165P49910 485 aa8.43□□□□□ -1.06
SMCHD1-202ENST00000577300 CLCQ05315 142 aa8.43□□□□□ -1.06
SMCHD1-202ENST00000577300 APOBRQ0VD83 1088 aa8.43□□□□□ -1.06
SMCHD1-202ENST00000577300 ATG14Q6ZNE5 492 aa8.43□□□□□ -1.06
SMCHD1-202ENST00000577300 SLITRK4Q8IW52 837 aa8.43□□□□□ -1.06
SMCHD1-202ENST00000577300 TCTN2Q96GX1 697 aa8.43□□□□□ -1.06
SMCHD1-202ENST00000577300 INTS4Q96HW7 963 aaKnown RBP8.43□□□□□ -1.06
SMCHD1-202ENST00000577300 TCAF2A6NFQ2 919 aa8.42□□□□□ -1.06
SMCHD1-202ENST00000577300 MEIS3P2A8K0S8 358 aa8.42□□□□□ -1.06
SMCHD1-202ENST00000577300 LRRFIP1Q32MZ4 808 aaKnown RBP8.42□□□□□ -1.06
SMCHD1-202ENST00000577300 GK5Q6ZS86 529 aa8.42□□□□□ -1.06
SMCHD1-202ENST00000577300 TMC3Q7Z5M5 1100 aa8.42□□□□□ -1.06
SMCHD1-202ENST00000577300 LINC00116Q8NCU8 138 aa8.42□□□□□ -1.06
SMCHD1-202ENST00000577300 KCNN1Q92952 543 aa8.42□□□□□ -1.06
SMCHD1-202ENST00000577300 SHISA4Q96DD7 197 aa8.42□□□□□ -1.06
SMCHD1-202ENST00000577300 GPR160Q9UJ42 338 aa8.42□□□□□ -1.06
SMCHD1-202ENST00000577300 NPIPB6E9PJ23 425 aa8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 TNFRSF10CO14798 259 aa8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 PSPNO60542 156 aa8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 PEX10O60683 326 aa8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 CLEC3AO75596 197 aa8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 PCBP3P57721 371 aaKnown RBP8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 KCNA10Q16322 511 aa8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 LDLRAD1Q5T700 205 aa8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 LCNL1Q6ZST4 164 aa8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 NKD1Q969G9 470 aa8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 FOXP3Q9BZS1 431 aa8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 TCFL5Q9UL49 500 aa8.41□□□□□ -1.06
SMCHD1-202ENST00000577300 NOTOA8MTQ0 251 aa8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 SIGLEC6O43699 453 aa8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 NME1P15531 152 aaKnown RBP8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 RPL10P27635 214 aaKnown RBP8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 MCM4P33991 863 aa8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 KIR2DL1P43626 348 aaPredicted RBP8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 KIR2DL2P43627 348 aaPredicted RBP8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 SNW1Q13573 536 aaKnown RBP8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 LCE4AQ5TA78 99 aa8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 KRTAP4-7Q9BYR0 210 aa8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 MCOLN1Q9GZU1 580 aa8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 ZNF552Q9H707 407 aaPredicted RBP8.4□□□□□ -1.06
SMCHD1-202ENST00000577300 TMEM82A0PJX8 343 aa8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 PRAMEF1O95521 474 aa8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 ZSCAN22P10073 491 aaPredicted RBP8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 BBS9Q3SYG4 887 aa8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 WAPLQ7Z5K2 1190 aa8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 NLRX1Q86UT6 975 aa8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 AMIGO3Q86WK7 504 aa8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 KIAA0825Q8IV33 1275 aa8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 TMEM87AQ8NBN3 555 aa8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 EAF1Q96JC9 268 aaPredicted RBP8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 MAP6Q96JE9 813 aa8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 PRDM14Q9GZV8 571 aa8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 ZMYM5Q9UJ78 669 aa8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 SMG5Q9UPR3 1016 aaKnown RBP8.39□□□□□ -1.07
SMCHD1-202ENST00000577300 MYOCOSA0A1B0GUC4 107 aa8.38□□□□□ -1.07
SMCHD1-202ENST00000577300 SSU72P8A0A1W2PR75 194 aa8.38□□□□□ -1.07
SMCHD1-202ENST00000577300 NRDCO43847 1150 aa8.38□□□□□ -1.07
SMCHD1-202ENST00000577300 SEMA7AO75326 666 aa8.38□□□□□ -1.07
SMCHD1-202ENST00000577300 ZNF16P17020 682 aaPredicted RBP8.38□□□□□ -1.07
SMCHD1-202ENST00000577300 ZNF605Q86T29 641 aa8.38□□□□□ -1.07
SMCHD1-202ENST00000577300 SPON2Q9BUD6 331 aa8.38□□□□□ -1.07
SMCHD1-202ENST00000577300 ANTXR1Q9H6X2 564 aa8.38□□□□□ -1.07
SMCHD1-202ENST00000577300 SYPP08247 313 aa8.37□□□□□ -1.07
SMCHD1-202ENST00000577300 TMEM192Q8IY95 271 aa8.37□□□□□ -1.07
SMCHD1-202ENST00000577300 ZNF512BQ96KM6 892 aaPredicted RBP8.37□□□□□ -1.07
SMCHD1-202ENST00000577300 TEX51A0A1B0GUA7 166 aa8.36□□□□□ -1.07
SMCHD1-202ENST00000577300 USP2O75604 605 aaPredicted RBP8.36□□□□□ -1.07
SMCHD1-202ENST00000577300 PDE6BP35913 854 aa8.36□□□□□ -1.07
SMCHD1-202ENST00000577300 LINC00310P59036 64 aa8.36□□□□□ -1.07
SMCHD1-202ENST00000577300 DLG4P78352 724 aa8.36□□□□□ -1.07
SMCHD1-202ENST00000577300 INTS3Q68E01 1043 aaKnown RBP8.36□□□□□ -1.07
SMCHD1-202ENST00000577300 CIAPIN1Q6FI81 312 aa8.36□□□□□ -1.07
SMCHD1-202ENST00000577300 SLC6A18Q96N87 628 aa8.36□□□□□ -1.07
SMCHD1-202ENST00000577300 CRTAC1Q9NQ79 661 aa8.36□□□□□ -1.07
SMCHD1-202ENST00000577300 CHST7Q9NS84 486 aa8.36□□□□□ -1.07
SMCHD1-202ENST00000577300 PRR13Q9NZ81 148 aa8.36□□□□□ -1.07
SMCHD1-202ENST00000577300 EFEMP2O95967 443 aa8.35□□□□□ -1.07
SMCHD1-202ENST00000577300 ENDOUP21128 410 aaKnown RBP8.35□□□□□ -1.07
SMCHD1-202ENST00000577300 ZNF76P36508 570 aa8.35□□□□□ -1.07
SMCHD1-202ENST00000577300 SLC14A2Q15849 920 aa8.35□□□□□ -1.07
SMCHD1-202ENST00000577300 HHIPL1Q96JK4 782 aa8.35□□□□□ -1.07
SMCHD1-202ENST00000577300 SLC9A7Q96T83 725 aa8.35□□□□□ -1.07
SMCHD1-202ENST00000577300 MKRN2Q9H000 416 aaKnown RBP8.35□□□□□ -1.07
SMCHD1-202ENST00000577300 ZNRF3Q9ULT6 936 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms