RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 UNC93B1Q9H1C4 597 aa23.86■■□□□ 1.41
NUP88-204ENST00000572290 PPP1R9AQ9ULJ8 1098 aa23.86■■□□□ 1.41
NUP88-204ENST00000572290 IVNS1ABPQ9Y6Y0 642 aa23.86■■□□□ 1.41
NUP88-204ENST00000572290 PTPREP23469 700 aa23.85■■□□□ 1.41
NUP88-204ENST00000572290 PLS1Q14651 629 aa23.85■■□□□ 1.41
NUP88-204ENST00000572290 RRP12Q5JTH9 1297 aaKnown RBP23.85■■□□□ 1.41
NUP88-204ENST00000572290 GMCL1P1Q8NEA9 526 aa23.85■■□□□ 1.41
NUP88-204ENST00000572290 SHCBP1Q8NEM2 672 aa23.85■■□□□ 1.41
NUP88-204ENST00000572290 ADAMTS5Q9UNA0 930 aa23.85■■□□□ 1.41
NUP88-204ENST00000572290 MYH8P13535 1937 aa23.84■■□□□ 1.41
NUP88-204ENST00000572290 GREB1LQ9C091 1923 aaPredicted RBP23.84■■□□□ 1.41
NUP88-204ENST00000572290 MGAMO43451 1857 aa23.84■■□□□ 1.41
NUP88-204ENST00000572290 SLC15A5A6NIM6 579 aa23.84■■□□□ 1.41
NUP88-204ENST00000572290 GJB1P08034 283 aa23.84■■□□□ 1.41
NUP88-204ENST00000572290 MAP2K5Q13163 448 aa23.84■■□□□ 1.41
NUP88-204ENST00000572290 TRMT44Q8IYL2 757 aaKnown RBP23.84■■□□□ 1.41
NUP88-204ENST00000572290 NKX2-3Q8TAU0 364 aa23.84■■□□□ 1.41
NUP88-204ENST00000572290 IL17RBQ9NRM6 502 aa23.84■■□□□ 1.41
NUP88-204ENST00000572290 STX8Q9UNK0 236 aa23.84■■□□□ 1.41
NUP88-204ENST00000572290 VWA5AO00534 786 aa23.83■■□□□ 1.41
NUP88-204ENST00000572290 ZNF213O14771 459 aa23.83■■□□□ 1.41
NUP88-204ENST00000572290 ERCC3P19447 782 aa23.83■■□□□ 1.41
NUP88-204ENST00000572290 TMEM132BQ14DG7 1078 aa23.83■■□□□ 1.41
NUP88-204ENST00000572290 AKNAD1Q5T1N1 836 aa23.83■■□□□ 1.41
NUP88-204ENST00000572290 SLFN13Q68D06 897 aa23.83■■□□□ 1.41
NUP88-204ENST00000572290 MFSD6Q6ZSS7 791 aa23.83■■□□□ 1.41
NUP88-204ENST00000572290 TRIB2Q92519 343 aa23.83■■□□□ 1.41
NUP88-204ENST00000572290 APBA2Q99767 749 aa23.83■■□□□ 1.41
NUP88-204ENST00000572290 SLF1Q9BQI6 1058 aa23.83■■□□□ 1.41
NUP88-204ENST00000572290 DSCC1Q9BVC3 393 aa23.83■■□□□ 1.41
NUP88-204ENST00000572290 CENPFP49454 3210 aa23.82■■□□□ 1.4
NUP88-204ENST00000572290 NMT2O60551 498 aa23.82■■□□□ 1.4
NUP88-204ENST00000572290 PCP11498 1178 aaKnown RBP23.82■■□□□ 1.4
NUP88-204ENST00000572290 ZKSCAN1P17029 563 aaPredicted RBP23.82■■□□□ 1.4
NUP88-204ENST00000572290 GJA8P48165 433 aa23.82■■□□□ 1.4
NUP88-204ENST00000572290 GRB14Q14449 540 aa23.82■■□□□ 1.4
NUP88-204ENST00000572290 CENPQQ7L2Z9 268 aaPredicted RBP23.82■■□□□ 1.4
NUP88-204ENST00000572290 STAG1Q8WVM7 1258 aa23.82■■□□□ 1.4
NUP88-204ENST00000572290 RNF41Q9H4P4 317 aaPredicted RBP23.82■■□□□ 1.4
NUP88-204ENST00000572290 MROH8Q9H579 483 aa23.82■■□□□ 1.4
NUP88-204ENST00000572290 STRNO43815 780 aa23.81■■□□□ 1.4
NUP88-204ENST00000572290 SLC25A27O95847 323 aa23.81■■□□□ 1.4
NUP88-204ENST00000572290 BMP3P12645 472 aa23.81■■□□□ 1.4
NUP88-204ENST00000572290 TRIM32Q13049 653 aa23.81■■□□□ 1.4
NUP88-204ENST00000572290 NCAPG2Q86XI2 1143 aa23.81■■□□□ 1.4
NUP88-204ENST00000572290 TBC1D10CQ8IV04 446 aa23.81■■□□□ 1.4
NUP88-204ENST00000572290 PRPF38AQ8NAV1 312 aaKnown RBP23.81■■□□□ 1.4
NUP88-204ENST00000572290 RUFY2Q8WXA3 655 aa23.81■■□□□ 1.4
NUP88-204ENST00000572290 NBPF3Q9H094 633 aa23.81■■□□□ 1.4
NUP88-204ENST00000572290 IL25Q9H293 177 aa23.81■■□□□ 1.4
NUP88-204ENST00000572290 RAD50Q92878 1312 aa23.81■■□□□ 1.4
NUP88-204ENST00000572290 CHMLP26374 656 aa23.8■■□□□ 1.4
NUP88-204ENST00000572290 NOVP48745 357 aa23.8■■□□□ 1.4
NUP88-204ENST00000572290 REPS2Q8NFH8 660 aa23.8■■□□□ 1.4
NUP88-204ENST00000572290 U2AF1L4Q8WU68 220 aaKnown RBP23.8■■□□□ 1.4
NUP88-204ENST00000572290 SHISA4Q96DD7 197 aa23.8■■□□□ 1.4
NUP88-204ENST00000572290 CTNNA3Q9UI47 895 aa23.8■■□□□ 1.4
NUP88-204ENST00000572290 FEM1BQ9UK73 627 aa23.8■■□□□ 1.4
NUP88-204ENST00000572290 SGPL1O95470 568 aa23.79■■□□□ 1.4
NUP88-204ENST00000572290 HOXC6P09630 235 aa23.79■■□□□ 1.4
NUP88-204ENST00000572290 STAT3P40763 770 aa23.79■■□□□ 1.4
NUP88-204ENST00000572290 CCL14Q16627 93 aa23.79■■□□□ 1.4
NUP88-204ENST00000572290 RIOX2Q8IUF8 465 aa23.79■■□□□ 1.4
NUP88-204ENST00000572290 GMCL1Q96IK5 515 aa23.79■■□□□ 1.4
NUP88-204ENST00000572290 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.79■■□□□ 1.4
NUP88-204ENST00000572290 HMX1Q9NP08 348 aaPredicted RBP23.79■■□□□ 1.4
NUP88-204ENST00000572290 PAK6Q9NQU5 681 aaPredicted RBP23.79■■□□□ 1.4
NUP88-204ENST00000572290 TCP11L1Q9NUJ3 509 aa23.79■■□□□ 1.4
NUP88-204ENST00000572290 ISY1Q9ULR0 285 aaKnown RBP23.79■■□□□ 1.4
NUP88-204ENST00000572290 RPTORQ8N122 1335 aa23.79■■□□□ 1.4
NUP88-204ENST00000572290 SLC1A4P43007 532 aa23.78■■□□□ 1.4
NUP88-204ENST00000572290 IMMTQ16891 758 aaKnown RBP23.78■■□□□ 1.4
NUP88-204ENST00000572290 KIFC2Q96AC6 838 aa23.78■■□□□ 1.4
NUP88-204ENST00000572290 DEFB118Q96PH6 123 aa23.78■■□□□ 1.4
NUP88-204ENST00000572290 ZNF214Q9UL59 606 aaPredicted RBP23.78■■□□□ 1.4
NUP88-204ENST00000572290 CTDP1Q9Y5B0 961 aaPredicted RBP23.78■■□□□ 1.4
NUP88-204ENST00000572290 A0A0G2JMZ2 1700 aa23.77■■□□□ 1.4
NUP88-204ENST00000572290 ZBED4O75132 1171 aa23.77■■□□□ 1.4
NUP88-204ENST00000572290 PRKAR2AP13861 404 aaKnown RBP23.77■■□□□ 1.4
NUP88-204ENST00000572290 MCCP23508 829 aa23.77■■□□□ 1.4
NUP88-204ENST00000572290 ADORA2AP29274 412 aa23.77■■□□□ 1.4
NUP88-204ENST00000572290 COPB2P35606 906 aa23.77■■□□□ 1.4
NUP88-204ENST00000572290 MAP3K21Q5TCX8 1036 aa23.77■■□□□ 1.4
NUP88-204ENST00000572290 DPP9Q86TI2 863 aa23.77■■□□□ 1.4
NUP88-204ENST00000572290 ABRAQ8N0Z2 381 aa23.77■■□□□ 1.4
NUP88-204ENST00000572290 ESR2Q92731 530 aa23.77■■□□□ 1.4
NUP88-204ENST00000572290 NEDD4P46934 1319 aa23.77■■□□□ 1.4
NUP88-204ENST00000572290 RBBP6Q7Z6E9 1792 aaKnown RBP23.76■■□□□ 1.39
NUP88-204ENST00000572290 TMEM232C9JQI7 657 aa23.76■■□□□ 1.39
NUP88-204ENST00000572290 CAPN2P17655 700 aa23.76■■□□□ 1.39
NUP88-204ENST00000572290 NT5C2P49902 561 aa23.76■■□□□ 1.39
NUP88-204ENST00000572290 NPLOC4Q8TAT6 608 aa23.76■■□□□ 1.39
NUP88-204ENST00000572290 CHMP4CQ96CF2 233 aa23.76■■□□□ 1.39
NUP88-204ENST00000572290 TEX13BQ9BXU2 312 aa23.76■■□□□ 1.39
NUP88-204ENST00000572290 TFRCP02786 760 aaKnown RBP23.75■■□□□ 1.39
NUP88-204ENST00000572290 TOP1P11387 765 aaKnown RBP23.75■■□□□ 1.39
NUP88-204ENST00000572290 FCER1AP12319 257 aa23.75■■□□□ 1.39
NUP88-204ENST00000572290 STAT2P52630 851 aa23.75■■□□□ 1.39
NUP88-204ENST00000572290 CACNB2Q08289 660 aaPredicted RBP23.75■■□□□ 1.39
NUP88-204ENST00000572290 MFSD14CQ5VZR4 134 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms