RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CCDC81Q6ZN84 652 aa4.17□□□□□ -1.74
VPS35-208ENST00000568612 METTL16Q86W50 562 aaKnown RBP4.17□□□□□ -1.74
VPS35-208ENST00000568612 ZNF428Q96B54 188 aa4.17□□□□□ -1.74
VPS35-208ENST00000568612 ASIC4Q96FT7 647 aa4.17□□□□□ -1.74
VPS35-208ENST00000568612 CRBNQ96SW2 442 aa4.17□□□□□ -1.74
VPS35-208ENST00000568612 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.17□□□□□ -1.74
VPS35-208ENST00000568612 DUSP15Q9H1R2 295 aaPredicted RBP4.17□□□□□ -1.74
VPS35-208ENST00000568612 CCSER2Q9H7U1 834 aa4.17□□□□□ -1.74
VPS35-208ENST00000568612 CNNM2Q9H8M5 875 aa4.17□□□□□ -1.74
VPS35-208ENST00000568612 LMCD1Q9NZU5 365 aa4.17□□□□□ -1.74
VPS35-208ENST00000568612 EFR3BQ9Y2G0 817 aa4.17□□□□□ -1.74
VPS35-208ENST00000568612 SHISA3A0PJX4 238 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 TPM2P07951 284 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 IMPDH2P12268 514 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 JUNBP17275 347 aaPredicted RBP4.16□□□□□ -1.74
VPS35-208ENST00000568612 ANP32AP39687 249 aaKnown RBP4.16□□□□□ -1.74
VPS35-208ENST00000568612 HK2P52789 917 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 EGR3Q06889 387 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 RAD51AP2Q09MP3 1159 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 FAM43BQ6ZT52 329 aaPredicted RBP4.16□□□□□ -1.74
VPS35-208ENST00000568612 TMPRSS7Q7RTY8 843 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 ATG4DQ86TL0 474 aaPredicted RBP4.16□□□□□ -1.74
VPS35-208ENST00000568612 TTC6Q86TZ1 520 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 TSPYL5Q86VY4 417 aaPredicted RBP4.16□□□□□ -1.74
VPS35-208ENST00000568612 FAM168AQ92567 244 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 GPRASP2Q96D09 838 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 SLC6A18Q96N87 628 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 ALPK1Q96QP1 1244 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 GPR62Q9BZJ7 368 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 PRDM16Q9HAZ2 1276 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 GINM1Q9NU53 330 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 FBXL21Q9UKT6 434 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 ZNRF3Q9ULT6 936 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 INPP5FQ9Y2H2 1132 aa4.16□□□□□ -1.74
VPS35-208ENST00000568612 DNAJC25-GNG10A0A024R161 153 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 SSU72P8A0A1W2PR75 194 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 MEIS3P2A8K0S8 358 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 MEIS1O00470 390 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 PAPLNO95428 1278 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 ESR1P03372 595 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 ITGB5P18084 799 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 NMIQ13287 307 aaPredicted RBP4.15□□□□□ -1.75
VPS35-208ENST00000568612 KCNMB1Q16558 191 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 RALGPS1Q5JS13 557 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 NBPF12Q5TAG4 269 aaPredicted RBP4.15□□□□□ -1.75
VPS35-208ENST00000568612 TDRD10Q5VZ19 366 aaKnown RBP4.15□□□□□ -1.75
VPS35-208ENST00000568612 CPLX3Q8WVH0 158 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 CCDC120Q96HB5 630 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 SLC9A7Q96T83 725 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 ACBD3Q9H3P7 528 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 FAM86C1Q9NVL1 165 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 CTNND2Q9UQB3 1225 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 PCDHA11Q9Y5I1 949 aa4.15□□□□□ -1.75
VPS35-208ENST00000568612 TNFRSF10CO14798 259 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 MAFGO15525 162 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 RAC2P15153 192 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 ERCC5P28715 1186 aaPredicted RBP4.14□□□□□ -1.75
VPS35-208ENST00000568612 CCNFP41002 786 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 AFMP43652 599 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 NASPP49321 788 aaPredicted RBP4.14□□□□□ -1.75
VPS35-208ENST00000568612 EIF6P56537 245 aaKnown RBP4.14□□□□□ -1.75
VPS35-208ENST00000568612 SLC20A2Q08357 652 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 SNW1Q13573 536 aaKnown RBP4.14□□□□□ -1.75
VPS35-208ENST00000568612 TAF3Q5VWG9 929 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 RUFY4Q6ZNE9 571 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 TMC3Q7Z5M5 1100 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 TMEM192Q8IY95 271 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 CCDC144CPQ8IYA2 1237 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 SPATA32Q96LK8 384 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 MAP7D2Q96T17 732 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 DNAJC2Q99543 621 aaKnown RBP4.14□□□□□ -1.75
VPS35-208ENST00000568612 TGIF2Q9GZN2 237 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 TMEM59LQ9UK28 342 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 HDAC5Q9UQL6 1122 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 PCDHB12Q9Y5F1 795 aa4.14□□□□□ -1.75
VPS35-208ENST00000568612 FKTNO75072 461 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 TP53P04637 393 aaPredicted RBP4.13□□□□□ -1.75
VPS35-208ENST00000568612 SRFP11831 508 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 RPL10P27635 214 aaKnown RBP4.13□□□□□ -1.75
VPS35-208ENST00000568612 GDNFP39905 211 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 COL9A2Q14055 689 aaPredicted RBP4.13□□□□□ -1.75
VPS35-208ENST00000568612 PPP2R5EQ16537 467 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 GAB4Q2WGN9 574 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 NBPF9Q3BBW0 867 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 LSRQ86X29 649 aaPredicted RBP4.13□□□□□ -1.75
VPS35-208ENST00000568612 ZSWIM9Q86XI8 627 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 GPATCH11Q8N954 259 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 FLAD1Q8NFF5 587 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 VWCEQ96DN2 955 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 TRIM44Q96DX7 344 aaPredicted RBP4.13□□□□□ -1.75
VPS35-208ENST00000568612 KIRREL1Q96J84 757 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 DHRS1Q96LJ7 313 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 IPO9Q96P70 1041 aaKnown RBP4.13□□□□□ -1.75
VPS35-208ENST00000568612 TM9SF2Q99805 663 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 DSCC1Q9BVC3 393 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 PRDM14Q9GZV8 571 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 PNNQ9H307 717 aaKnown RBP4.13□□□□□ -1.75
VPS35-208ENST00000568612 ADAMTS10Q9H324 1103 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 SLC52A1Q9NWF4 448 aa4.13□□□□□ -1.75
VPS35-208ENST00000568612 GFOD1Q9NXC2 390 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms