RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 TANGO6Q9C0B7 1094 aa11.32□□□□□ -0.6
SF3B3-211ENST00000568291 PORCNQ9H237 461 aa11.32□□□□□ -0.6
SF3B3-211ENST00000568291 CLIP2Q9UDT6 1046 aa11.32□□□□□ -0.6
SF3B3-211ENST00000568291 ZMYND8Q9ULU4 1186 aaPredicted RBP11.32□□□□□ -0.6
SF3B3-211ENST00000568291 ZNF236Q9UL36 1845 aa11.32□□□□□ -0.6
SF3B3-211ENST00000568291 BAZ2AQ9UIF9 1905 aaKnown RBP11.31□□□□□ -0.6
SF3B3-211ENST00000568291 PARP14Q460N5 1801 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 SOX1O00570 391 aaPredicted RBP11.31□□□□□ -0.6
SF3B3-211ENST00000568291 NMT2O60551 498 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 HSPD1P10809 573 aaKnown RBP11.31□□□□□ -0.6
SF3B3-211ENST00000568291 MAPK4P31152 587 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 USP14P54578 494 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 ERVK-9P63128 1117 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 ERVK-24P63145 666 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 TFAP4Q01664 338 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 TTC22Q5TAA0 569 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 MAP3K21Q5TCX8 1036 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 C12orf42Q96LP6 360 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 APBA2Q99767 749 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 NBPF3Q9H094 633 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 C11orf49Q9H6J7 331 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 KANSL2Q9H9L4 492 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 CWC22Q9HCG8 908 aaKnown RBP11.31□□□□□ -0.6
SF3B3-211ENST00000568291 FBXO28Q9NVF7 368 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 BTBD7Q9P203 1132 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 TMX2Q9Y320 296 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 SZT2Q5T011 3432 aa11.31□□□□□ -0.6
SF3B3-211ENST00000568291 XRCC5P13010 732 aaKnown RBP11.3□□□□□ -0.6
SF3B3-211ENST00000568291 RGS2P41220 211 aa11.3□□□□□ -0.6
SF3B3-211ENST00000568291 MNX1P50219 401 aaPredicted RBP11.3□□□□□ -0.6
SF3B3-211ENST00000568291 RRP12Q5JTH9 1297 aaKnown RBP11.3□□□□□ -0.6
SF3B3-211ENST00000568291 WDR78Q5VTH9 848 aa11.3□□□□□ -0.6
SF3B3-211ENST00000568291 GPR142Q7Z601 462 aa11.3□□□□□ -0.6
SF3B3-211ENST00000568291 CCAR1Q8IX12 1150 aaKnown RBP11.3□□□□□ -0.6
SF3B3-211ENST00000568291 TRMT44Q8IYL2 757 aaKnown RBP11.3□□□□□ -0.6
SF3B3-211ENST00000568291 LRCH3Q96II8 777 aa11.3□□□□□ -0.6
SF3B3-211ENST00000568291 VCPKMTQ9H867 229 aa11.3□□□□□ -0.6
SF3B3-211ENST00000568291 ARHGEF10LQ9HCE6 1279 aa11.3□□□□□ -0.6
SF3B3-211ENST00000568291 TOMM22Q9NS69 142 aa11.3□□□□□ -0.6
SF3B3-211ENST00000568291 DIAPH3Q9NSV4 1193 aa11.3□□□□□ -0.6
SF3B3-211ENST00000568291 OGDHLQ9ULD0 1010 aa11.3□□□□□ -0.6
SF3B3-211ENST00000568291 MTMR7Q9Y216 660 aa11.3□□□□□ -0.6
SF3B3-211ENST00000568291 RLFQ13129 1914 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 SPDYE16A6NNV3 312 aaPredicted RBP11.29□□□□□ -0.6
SF3B3-211ENST00000568291 RANBP6O60518 1105 aaKnown RBP11.29□□□□□ -0.6
SF3B3-211ENST00000568291 TSPY3P0CV98 308 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 TSPY8P0CW00 308 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 SYN1P17600 705 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 CCL14Q16627 93 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 FAM83BQ5T0W9 1011 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 RASGRP2Q7LDG7 609 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 PLEKHH3Q7Z736 793 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 LRRC47Q8N1G4 583 aaKnown RBP11.29□□□□□ -0.6
SF3B3-211ENST00000568291 ATG4CQ96DT6 458 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 CEP95Q96GE4 821 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 GDF15Q99988 308 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 PFASO15067 1338 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 CCDC171Q6TFL3 1326 aa11.29□□□□□ -0.6
SF3B3-211ENST00000568291 LTBP2Q14767 1821 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 IGKV6D-41A0A0C4DH26 115 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 F5H6K3 240 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 FLOT1O75955 427 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 CCND3P30281 292 aaPredicted RBP11.28□□□□□ -0.6
SF3B3-211ENST00000568291 SLC4A3P48751 1232 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 PDE4BQ07343 736 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 KLRC3Q07444 240 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 CACNB2Q08289 660 aaPredicted RBP11.28□□□□□ -0.6
SF3B3-211ENST00000568291 PLS1Q14651 629 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 COG2Q14746 738 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 MORN1Q5T089 497 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 TBC1D10CQ8IV04 446 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 USP6NLQ92738 828 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 IL17RBQ9NRM6 502 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 MTMR4Q9NYA4 1195 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.28□□□□□ -0.6
SF3B3-211ENST00000568291 COL11A1P12107 1806 aaPredicted RBP11.28□□□□□ -0.6
SF3B3-211ENST00000568291 ROBO3Q96MS0 1386 aa11.28□□□□□ -0.6
SF3B3-211ENST00000568291 NDUFB10O96000 172 aa11.27□□□□□ -0.61
SF3B3-211ENST00000568291 SLC3A2P08195 630 aaKnown RBP11.27□□□□□ -0.61
SF3B3-211ENST00000568291 BMP8BP34820 402 aa11.27□□□□□ -0.61
SF3B3-211ENST00000568291 MAGEA10P43363 369 aaPredicted RBP11.27□□□□□ -0.61
SF3B3-211ENST00000568291 CCNA1P78396 465 aa11.27□□□□□ -0.61
SF3B3-211ENST00000568291 MAP2K5Q13163 448 aa11.27□□□□□ -0.61
SF3B3-211ENST00000568291 ALX1Q15699 326 aa11.27□□□□□ -0.61
SF3B3-211ENST00000568291 NEDD1Q8NHV4 660 aa11.27□□□□□ -0.61
SF3B3-211ENST00000568291 NYAP2Q9P242 653 aa11.27□□□□□ -0.61
SF3B3-211ENST00000568291 ISY1Q9ULR0 285 aaKnown RBP11.27□□□□□ -0.61
SF3B3-211ENST00000568291 RABGAP1Q9Y3P9 1069 aa11.27□□□□□ -0.61
SF3B3-211ENST00000568291 ZNFX1Q9P2E3 1918 aaKnown RBP11.27□□□□□ -0.61
SF3B3-211ENST00000568291 PLXNA1Q9UIW2 1896 aa11.26□□□□□ -0.61
SF3B3-211ENST00000568291 TSPY2A6NKD2 308 aa11.26□□□□□ -0.61
SF3B3-211ENST00000568291 COL6A1P12109 1028 aa11.26□□□□□ -0.61
SF3B3-211ENST00000568291 CHMLP26374 656 aa11.26□□□□□ -0.61
SF3B3-211ENST00000568291 SNAP25P60880 206 aa11.26□□□□□ -0.61
SF3B3-211ENST00000568291 PTH1RQ03431 593 aa11.26□□□□□ -0.61
SF3B3-211ENST00000568291 ZKSCAN3Q9BRR0 538 aa11.26□□□□□ -0.61
SF3B3-211ENST00000568291 MOV10L1Q9BXT6 1211 aaKnown RBP11.26□□□□□ -0.61
SF3B3-211ENST00000568291 SH2D4AQ9H788 454 aa11.26□□□□□ -0.61
SF3B3-211ENST00000568291 GOPCQ9HD26 462 aa11.26□□□□□ -0.61
SF3B3-211ENST00000568291 HOXC10Q9NYD6 342 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms