RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 ALYREFQ86V81 257 aaKnown RBP14.42□□□□□ -0.1
CLK3-222ENST00000568232 MEIS3Q99687 375 aa14.42□□□□□ -0.1
CLK3-222ENST00000568232 TANGO6Q9C0B7 1094 aa14.42□□□□□ -0.1
CLK3-222ENST00000568232 SLC28A3Q9HAS3 691 aa14.42□□□□□ -0.1
CLK3-222ENST00000568232 SERPINB13Q9UIV8 391 aa14.42□□□□□ -0.1
CLK3-222ENST00000568232 NCOR1O75376 2440 aa14.41□□□□□ -0.1
CLK3-222ENST00000568232 SRGAP3O43295 1099 aa14.41□□□□□ -0.1
CLK3-222ENST00000568232 CYP2E1P05181 493 aaPredicted RBP14.41□□□□□ -0.1
CLK3-222ENST00000568232 ZNF865P0CJ78 1059 aaPredicted RBP14.41□□□□□ -0.1
CLK3-222ENST00000568232 IRX5P78411 483 aaPredicted RBP14.41□□□□□ -0.1
CLK3-222ENST00000568232 SEPT2Q15019 361 aa14.41□□□□□ -0.1
CLK3-222ENST00000568232 RAB30Q15771 203 aa14.41□□□□□ -0.1
CLK3-222ENST00000568232 TMEM31Q5JXX7 168 aa14.41□□□□□ -0.1
CLK3-222ENST00000568232 KIAA1755Q5JYT7 1200 aa14.41□□□□□ -0.1
CLK3-222ENST00000568232 ABRAQ8N0Z2 381 aa14.41□□□□□ -0.1
CLK3-222ENST00000568232 KHSRPQ92945 711 aaKnown RBP eCLIP14.41□□□□□ -0.1
CLK3-222ENST00000568232 TINF2Q9BSI4 451 aa14.41□□□□□ -0.1
CLK3-222ENST00000568232 PPP1R12CQ9BZL4 782 aa14.41□□□□□ -0.1
CLK3-222ENST00000568232 TSPYL2Q9H2G4 693 aaPredicted RBP14.41□□□□□ -0.1
CLK3-222ENST00000568232 MROH8Q9H579 483 aa14.41□□□□□ -0.1
CLK3-222ENST00000568232 CDK5RAP2Q96SN8 1893 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 FAM86C2PA6NEL3 165 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 APBB1O00213 710 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 UQCRFS1P1P0C7P4 283 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 FCER1AP12319 257 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 SHMT1P34896 483 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 SKIV2LQ15477 1246 aaKnown RBP14.4□□□□□ -0.1
CLK3-222ENST00000568232 KCNA10Q16322 511 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 MIGA1Q8NAN2 632 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 NUP133Q8WUM0 1156 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 TSEN34Q9BSV6 310 aaKnown RBP14.4□□□□□ -0.1
CLK3-222ENST00000568232 CABP5Q9NP86 173 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 C11orf16Q9NQ32 467 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 TRANK1O15050 2925 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 SYNRGQ9UMZ2 1314 aa14.4□□□□□ -0.1
CLK3-222ENST00000568232 MYADML2A6NDP7 307 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 AKR1A1P14550 325 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 MYOGP15173 224 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 USP5P45974 858 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 PLCD1P51178 756 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 RABGGTBP53611 331 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 CCSAPQ6IQ19 270 aaPredicted RBP14.39□□□□□ -0.11
CLK3-222ENST00000568232 CCDC174Q6PII3 467 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 TMEM199Q8N511 208 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 ATG4CQ96DT6 458 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 EHD4Q9H223 541 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 PIH1D3Q9NQM4 214 aaKnown RBP14.39□□□□□ -0.11
CLK3-222ENST00000568232 NRBP1Q9UHY1 535 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 SMCHD1A6NHR9 2005 aa14.39□□□□□ -0.11
CLK3-222ENST00000568232 FOCADQ5VW36 1801 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 RFXAPO00287 272 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 CYP7A1P22680 504 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 CYP2C18P33260 490 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 CDK7P50613 346 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 TMEM132BQ14DG7 1078 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 AAK1Q2M2I8 961 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 ZNF792Q3KQV3 632 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 TTC39AQ5SRH9 613 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 PSRC1Q6PGN9 363 aaPredicted RBP14.38□□□□□ -0.11
CLK3-222ENST00000568232 KLHDC9Q8NEP7 349 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 HERVK_113Q902F9 699 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 MMP19Q99542 508 aa14.38□□□□□ -0.11
CLK3-222ENST00000568232 MOXD2PA6NHM9 499 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 ERC2O15083 957 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 FLOT1O75955 427 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 ZAP70P43403 619 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 OTOP2Q7RTS6 562 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 SPICE1Q8N0Z3 855 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 MB21D1Q8N884 522 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 VTI1AQ96AJ9 217 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 IL23AQ9NPF7 189 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 SMC4Q9NTJ3 1288 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 HDAC5Q9UQL6 1122 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 ZNF521Q96K83 1311 aa14.37□□□□□ -0.11
CLK3-222ENST00000568232 A0A0G2JMZ2 1700 aa14.36□□□□□ -0.11
CLK3-222ENST00000568232 MPHOSPH10O00566 681 aaKnown RBP14.36□□□□□ -0.11
CLK3-222ENST00000568232 FGBP02675 491 aa14.36□□□□□ -0.11
CLK3-222ENST00000568232 PPP2R2DQ66LE6 453 aa14.36□□□□□ -0.11
CLK3-222ENST00000568232 TTC6Q86TZ1 520 aa14.36□□□□□ -0.11
CLK3-222ENST00000568232 GLT1D1Q96MS3 346 aa14.36□□□□□ -0.11
CLK3-222ENST00000568232 DBNDD2Q9BQY9 259 aa14.36□□□□□ -0.11
CLK3-222ENST00000568232 NOB1Q9ULX3 412 aaKnown RBP14.36□□□□□ -0.11
CLK3-222ENST00000568232 ROBO3Q96MS0 1386 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 TLL1O43897 1013 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 GPR37L1O60883 481 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 ASGR1P07306 291 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 MTX1Q13505 466 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 ALDH1L2Q3SY69 923 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 KRT40Q6A162 431 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 CLEC10AQ8IUN9 316 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 FAM126BQ8IXS8 530 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 FAM9BQ8IZU0 186 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 CNPY2Q9Y2B0 182 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 ELP1O95163 1332 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 UMODL1Q5DID0 1318 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 MROH7Q68CQ1 1323 aa14.35□□□□□ -0.11
CLK3-222ENST00000568232 ARVCFO00192 962 aa14.34□□□□□ -0.11
CLK3-222ENST00000568232 ADCY6O43306 1168 aa14.34□□□□□ -0.11
CLK3-222ENST00000568232 SLC25A27O95847 323 aa14.34□□□□□ -0.11
CLK3-222ENST00000568232 SNAI1O95863 264 aaPredicted RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms