RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RASGRP4Q8TDF6 673 aa23.13■■□□□ 1.29
CLN3-230ENST00000568076 MXD3Q9BW11 206 aa23.13■■□□□ 1.29
CLN3-230ENST00000568076 COL11A2P13942 1736 aaPredicted RBP23.13■■□□□ 1.29
CLN3-230ENST00000568076 MMP10P09238 476 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 MCM7P33993 719 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 CEP95Q96GE4 821 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 ZC3H12CQ9C0D7 883 aaKnown RBP23.12■■□□□ 1.29
CLN3-230ENST00000568076 CPVLQ9H3G5 476 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 IMPACTQ9P2X3 320 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 STXBP3O00186 592 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 SLFN14P0C7P3 912 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 NOVP48745 357 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 DOK7Q18PE1 504 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 DPF2Q92785 391 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 FANCLQ9NW38 375 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 SUGT1Q9Y2Z0 365 aa23.12■■□□□ 1.29
CLN3-230ENST00000568076 KLRF2D3W0D1 207 aa23.11■■□□□ 1.29
CLN3-230ENST00000568076 FMR1Q06787 632 aaKnown RBP eCLIP23.11■■□□□ 1.29
CLN3-230ENST00000568076 TMC6Q7Z403 805 aa23.11■■□□□ 1.29
CLN3-230ENST00000568076 C4orf32Q8N8J7 132 aa23.11■■□□□ 1.29
CLN3-230ENST00000568076 TRIML1Q8N9V2 468 aa23.11■■□□□ 1.29
CLN3-230ENST00000568076 PAGE5Q96GU1 130 aa23.11■■□□□ 1.29
CLN3-230ENST00000568076 DDX4Q9NQI0 724 aaKnown RBP23.11■■□□□ 1.29
CLN3-230ENST00000568076 BARHL2Q9NY43 387 aa23.11■■□□□ 1.29
CLN3-230ENST00000568076 SKILP12757 684 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 ALDH1B1P30837 517 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 PICALMQ13492 652 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 DPP8Q6V1X1 898 aaPredicted RBP23.1■■□□□ 1.29
CLN3-230ENST00000568076 HEATR3Q7Z4Q2 680 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 MLKLQ8NB16 471 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 PCDHA6Q9UN73 950 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 PCDHA8Q9Y5H6 950 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 QSER1Q2KHR3 1735 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 CASP1P29466 404 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 AFMP43652 599 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 GSDMDP57764 484 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 GABPAQ06546 454 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 USP17L2Q6R6M4 530 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 DAGLBQ8NCG7 672 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 PRIMPOLQ96LW4 560 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 MED15Q96RN5 788 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 LZTS2Q9BRK4 669 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 SPZ1Q9BXG8 430 aa23.1■■□□□ 1.29
CLN3-230ENST00000568076 TTF2Q9UNY4 1162 aaKnown RBP23.1■■□□□ 1.29
CLN3-230ENST00000568076 PDE6BP35913 854 aa23.09■■□□□ 1.29
CLN3-230ENST00000568076 TOP1P11387 765 aaKnown RBP23.09■■□□□ 1.29
CLN3-230ENST00000568076 E2F4Q16254 413 aa23.09■■□□□ 1.29
CLN3-230ENST00000568076 ARMCX5Q6P1M9 558 aa23.09■■□□□ 1.29
CLN3-230ENST00000568076 MASTLQ96GX5 879 aa23.09■■□□□ 1.29
CLN3-230ENST00000568076 PARP3Q9Y6F1 533 aa23.09■■□□□ 1.29
CLN3-230ENST00000568076 PARP1P09874 1014 aaKnown RBP23.08■■□□□ 1.29
CLN3-230ENST00000568076 UBASH3AP57075 661 aa23.08■■□□□ 1.29
CLN3-230ENST00000568076 MSL1Q68DK7 614 aa23.08■■□□□ 1.29
CLN3-230ENST00000568076 CCDC148Q8NFR7 591 aa23.08■■□□□ 1.29
CLN3-230ENST00000568076 MYRIPQ8NFW9 859 aa23.08■■□□□ 1.29
CLN3-230ENST00000568076 SCNN1DP51172 638 aa23.07■■□□□ 1.28
CLN3-230ENST00000568076 DPYDQ12882 1025 aa23.07■■□□□ 1.28
CLN3-230ENST00000568076 PLIN4Q96Q06 1357 aa23.07■■□□□ 1.28
CLN3-230ENST00000568076 MYO1BO43795 1136 aa23.07■■□□□ 1.28
CLN3-230ENST00000568076 SERPINC1P01008 464 aa23.07■■□□□ 1.28
CLN3-230ENST00000568076 ARL6IP4Q66PJ3 421 aaKnown RBP23.07■■□□□ 1.28
CLN3-230ENST00000568076 GALNT17Q6IS24 598 aa23.07■■□□□ 1.28
CLN3-230ENST00000568076 TRMT44Q8IYL2 757 aaKnown RBP23.07■■□□□ 1.28
CLN3-230ENST00000568076 ENOX1Q8TC92 643 aaKnown RBP23.07■■□□□ 1.28
CLN3-230ENST00000568076 ADAMTSL1Q8N6G6 1762 aa23.07■■□□□ 1.28
CLN3-230ENST00000568076 CCDC194A0A1B0GVG4 234 aa23.06■■□□□ 1.28
CLN3-230ENST00000568076 USP27XA6NNY8 438 aa23.06■■□□□ 1.28
CLN3-230ENST00000568076 FLAD1Q8NFF5 587 aa23.06■■□□□ 1.28
CLN3-230ENST00000568076 C16orf45Q96MC5 204 aaPredicted RBP23.06■■□□□ 1.28
CLN3-230ENST00000568076 USP40Q9NVE5 1235 aa23.06■■□□□ 1.28
CLN3-230ENST00000568076 DACH1Q9UI36 760 aa23.06■■□□□ 1.28
CLN3-230ENST00000568076 NFE2L3Q9Y4A8 694 aa23.06■■□□□ 1.28
CLN3-230ENST00000568076 USP17L5A8MUK1 530 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 AKR1B1P15121 316 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 ZNF18P17022 549 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 HSP90AA4PQ58FG1 418 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 CCDC34Q96HJ3 373 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 INTS13Q9NVM9 706 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 MTMR4Q9NYA4 1195 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 INF2Q27J81 1249 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 PDXDC2PQ6P474 469 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 CCDC150Q8NCX0 1101 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 ZMYND12Q9H0C1 365 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 KCNQ5Q9NR82 932 aa23.05■■□□□ 1.28
CLN3-230ENST00000568076 IGKV6D-41A0A0C4DH26 115 aa23.04■■□□□ 1.28
CLN3-230ENST00000568076 TMEM232C9JQI7 657 aa23.04■■□□□ 1.28
CLN3-230ENST00000568076 CBFA2T2O43439 604 aa23.04■■□□□ 1.28
CLN3-230ENST00000568076 CD44P16070 742 aaKnown RBP23.04■■□□□ 1.28
CLN3-230ENST00000568076 CFAP100Q494V2 611 aa23.04■■□□□ 1.28
CLN3-230ENST00000568076 APOBEC3HQ6NTF7 200 aaKnown RBP23.04■■□□□ 1.28
CLN3-230ENST00000568076 CDC42EP5Q6NZY7 148 aa23.04■■□□□ 1.28
CLN3-230ENST00000568076 HOMER1Q86YM7 354 aa23.04■■□□□ 1.28
CLN3-230ENST00000568076 STAMQ92783 540 aa23.04■■□□□ 1.28
CLN3-230ENST00000568076 MTRQ99707 1265 aa23.04■■□□□ 1.28
CLN3-230ENST00000568076 TMEM60Q9H2L4 133 aa23.04■■□□□ 1.28
CLN3-230ENST00000568076 PDHBP11177 359 aa23.03■■□□□ 1.28
CLN3-230ENST00000568076 LONP1P36776 959 aaKnown RBP23.03■■□□□ 1.28
CLN3-230ENST00000568076 TPD52L1Q16890 204 aaPredicted RBP23.03■■□□□ 1.28
CLN3-230ENST00000568076 ZNF772Q68DY9 489 aaPredicted RBP23.03■■□□□ 1.28
CLN3-230ENST00000568076 FAM177A1Q8N128 213 aaPredicted RBP23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms