RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ZYXQ15942 572 aaKnown RBP20.39■□□□□ 0.85
CLN3-217ENST00000565354 SH3D19Q5HYK7 790 aa20.39■□□□□ 0.85
CLN3-217ENST00000565354 MAP3K21Q5TCX8 1036 aa20.39■□□□□ 0.85
CLN3-217ENST00000565354 MFSD6Q6ZSS7 791 aa20.39■□□□□ 0.85
CLN3-217ENST00000565354 UBE2OQ9C0C9 1292 aaKnown RBP20.39■□□□□ 0.85
CLN3-217ENST00000565354 SH2D4AQ9H788 454 aa20.39■□□□□ 0.85
CLN3-217ENST00000565354 LAMA2P24043 3122 aaKnown RBP20.38■□□□□ 0.85
CLN3-217ENST00000565354 PFASO15067 1338 aa20.38■□□□□ 0.85
CLN3-217ENST00000565354 RANBP6O60518 1105 aaKnown RBP20.38■□□□□ 0.85
CLN3-217ENST00000565354 GUCY1A2P33402 732 aa20.38■□□□□ 0.85
CLN3-217ENST00000565354 USP14P54578 494 aa20.38■□□□□ 0.85
CLN3-217ENST00000565354 AKNAD1Q5T1N1 836 aa20.38■□□□□ 0.85
CLN3-217ENST00000565354 USP17L2Q6R6M4 530 aa20.38■□□□□ 0.85
CLN3-217ENST00000565354 KANSL2Q9H9L4 492 aa20.38■□□□□ 0.85
CLN3-217ENST00000565354 PCP11498 1178 aaKnown RBP20.37■□□□□ 0.85
CLN3-217ENST00000565354 PRKAR2AP13861 404 aaKnown RBP20.37■□□□□ 0.85
CLN3-217ENST00000565354 CYP2B6P20813 491 aa20.37■□□□□ 0.85
CLN3-217ENST00000565354 TFAP4Q01664 338 aa20.37■□□□□ 0.85
CLN3-217ENST00000565354 FAM47AQ5JRC9 791 aa20.37■□□□□ 0.85
CLN3-217ENST00000565354 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.37■□□□□ 0.85
CLN3-217ENST00000565354 DNAH12Q6ZR08 3092 aa20.37■□□□□ 0.85
CLN3-217ENST00000565354 LAMA4Q16363 1823 aa20.37■□□□□ 0.85
CLN3-217ENST00000565354 XRCC5P13010 732 aaKnown RBP20.36■□□□□ 0.85
CLN3-217ENST00000565354 CLEC10AQ8IUN9 316 aa20.36■□□□□ 0.85
CLN3-217ENST00000565354 TBC1D10CQ8IV04 446 aa20.36■□□□□ 0.85
CLN3-217ENST00000565354 ACER1Q8TDN7 264 aa20.36■□□□□ 0.85
CLN3-217ENST00000565354 STAG1Q8WVM7 1258 aa20.36■□□□□ 0.85
CLN3-217ENST00000565354 INCENPQ9NQS7 918 aa20.36■□□□□ 0.85
CLN3-217ENST00000565354 GTF3C3Q9Y5Q9 886 aa20.36■□□□□ 0.85
CLN3-217ENST00000565354 RBM8AQ9Y5S9 174 aaKnown RBP20.36■□□□□ 0.85
CLN3-217ENST00000565354 ORC4O43929 436 aa20.35■□□□□ 0.85
CLN3-217ENST00000565354 COL6A1P12109 1028 aa20.35■□□□□ 0.85
CLN3-217ENST00000565354 IRX3P78415 501 aaPredicted RBP20.35■□□□□ 0.85
CLN3-217ENST00000565354 PPP4R3BQ5MIZ7 849 aa20.35■□□□□ 0.85
CLN3-217ENST00000565354 SOCS4Q8WXH5 440 aa20.35■□□□□ 0.85
CLN3-217ENST00000565354 MAP4K1Q92918 833 aa20.35■□□□□ 0.85
CLN3-217ENST00000565354 NUDT12Q9BQG2 462 aa20.35■□□□□ 0.85
CLN3-217ENST00000565354 RAD21O60216 631 aa20.34■□□□□ 0.85
CLN3-217ENST00000565354 EEF2P13639 858 aaKnown RBP20.34■□□□□ 0.85
CLN3-217ENST00000565354 TRMT44Q8IYL2 757 aaKnown RBP20.34■□□□□ 0.85
CLN3-217ENST00000565354 NEDD1Q8NHV4 660 aa20.34■□□□□ 0.85
CLN3-217ENST00000565354 ESR2Q92731 530 aa20.34■□□□□ 0.85
CLN3-217ENST00000565354 LSG1Q9H089 658 aaKnown RBP20.34■□□□□ 0.85
CLN3-217ENST00000565354 KIAA1683Q9H0B3 1180 aa20.34■□□□□ 0.85
CLN3-217ENST00000565354 FRMPD3Q5JV73 1810 aa20.33■□□□□ 0.85
CLN3-217ENST00000565354 HOXA7P31268 230 aaPredicted RBP20.33■□□□□ 0.85
CLN3-217ENST00000565354 CACNB2Q08289 660 aaPredicted RBP20.33■□□□□ 0.85
CLN3-217ENST00000565354 TRDNQ13061 729 aa20.33■□□□□ 0.85
CLN3-217ENST00000565354 GPRC5AQ8NFJ5 357 aa20.33■□□□□ 0.85
CLN3-217ENST00000565354 P2RX7Q99572 595 aaKnown RBP20.33■□□□□ 0.85
CLN3-217ENST00000565354 KRT23Q9C075 422 aa20.33■□□□□ 0.85
CLN3-217ENST00000565354 CNNM2Q9H8M5 875 aa20.33■□□□□ 0.85
CLN3-217ENST00000565354 TXNRD2Q9NNW7 524 aa20.33■□□□□ 0.85
CLN3-217ENST00000565354 PLIN4Q96Q06 1357 aa20.33■□□□□ 0.84
CLN3-217ENST00000565354 PEX10O60683 326 aa20.32■□□□□ 0.84
CLN3-217ENST00000565354 FGRP09769 529 aa20.32■□□□□ 0.84
CLN3-217ENST00000565354 ZKSCAN1P17029 563 aaPredicted RBP20.32■□□□□ 0.84
CLN3-217ENST00000565354 NT5C2P49902 561 aa20.32■□□□□ 0.84
CLN3-217ENST00000565354 HERVK_113P62684 666 aa20.32■□□□□ 0.84
CLN3-217ENST00000565354 CEP95Q96GE4 821 aa20.32■□□□□ 0.84
CLN3-217ENST00000565354 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.32■□□□□ 0.84
CLN3-217ENST00000565354 COL25A1Q9BXS0 654 aaPredicted RBP20.32■□□□□ 0.84
CLN3-217ENST00000565354 GOPCQ9HD26 462 aa20.32■□□□□ 0.84
CLN3-217ENST00000565354 NYAP2Q9P242 653 aa20.32■□□□□ 0.84
CLN3-217ENST00000565354 CLIP2Q9UDT6 1046 aa20.32■□□□□ 0.84
CLN3-217ENST00000565354 TMX2Q9Y320 296 aa20.32■□□□□ 0.84
CLN3-217ENST00000565354 TACC3Q9Y6A5 838 aa20.32■□□□□ 0.84
CLN3-217ENST00000565354 NEDD4P46934 1319 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 A0A1W2PRG0 241 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 REC8O95072 547 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 TTLL1O95922 423 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 CYP21A2P08686 494 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 MAPK4P31152 587 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 LRRC26Q2I0M4 334 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 LHX8Q68G74 356 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 RALYLQ86SE5 291 aaKnown RBP20.31■□□□□ 0.84
CLN3-217ENST00000565354 USP6NLQ92738 828 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 C12orf42Q96LP6 360 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 EMILIN3Q9NT22 766 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 MTMR4Q9NYA4 1195 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 STX8Q9UNK0 236 aa20.31■□□□□ 0.84
CLN3-217ENST00000565354 GREB1LQ9C091 1923 aaPredicted RBP20.31■□□□□ 0.84
CLN3-217ENST00000565354 VCANP13611 3396 aa20.3■□□□□ 0.84
CLN3-217ENST00000565354 IGKV6D-41A0A0C4DH26 115 aa20.3■□□□□ 0.84
CLN3-217ENST00000565354 B4E1Z4 1266 aa20.3■□□□□ 0.84
CLN3-217ENST00000565354 MDM2Q00987 491 aaPredicted RBP20.3■□□□□ 0.84
CLN3-217ENST00000565354 RNF20Q5VTR2 975 aa20.3■□□□□ 0.84
CLN3-217ENST00000565354 VCPKMTQ9H867 229 aa20.3■□□□□ 0.84
CLN3-217ENST00000565354 RBPJLQ9UBG7 517 aa20.3■□□□□ 0.84
CLN3-217ENST00000565354 POTEB2H3BUK9 544 aa20.29■□□□□ 0.84
CLN3-217ENST00000565354 KDM4AO75164 1064 aa20.29■□□□□ 0.84
CLN3-217ENST00000565354 VCAM1P19320 739 aa20.29■□□□□ 0.84
CLN3-217ENST00000565354 CCND3P30281 292 aaPredicted RBP20.29■□□□□ 0.84
CLN3-217ENST00000565354 RGS2P41220 211 aa20.29■□□□□ 0.84
CLN3-217ENST00000565354 FAM109BQ6ICB4 259 aaPredicted RBP20.29■□□□□ 0.84
CLN3-217ENST00000565354 IQCA1Q86XH1 822 aa20.29■□□□□ 0.84
CLN3-217ENST00000565354 SIAH1Q8IUQ4 282 aa20.29■□□□□ 0.84
CLN3-217ENST00000565354 LPAR1Q92633 364 aa20.29■□□□□ 0.84
CLN3-217ENST00000565354 USP17L15C9J2P7 530 aa20.28■□□□□ 0.84
CLN3-217ENST00000565354 USP17L13C9JLJ4 530 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms