RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PPARAQ07869 468 aa17.74■□□□□ 0.43
CLN3-213ENST00000565047 CHD1LQ86WJ1 897 aa17.74■□□□□ 0.43
CLN3-213ENST00000565047 CCAR1Q8IX12 1150 aaKnown RBP17.74■□□□□ 0.43
CLN3-213ENST00000565047 ANKLE1Q8NAG6 615 aa17.74■□□□□ 0.43
CLN3-213ENST00000565047 NEDD1Q8NHV4 660 aa17.74■□□□□ 0.43
CLN3-213ENST00000565047 DIS3LQ8TF46 1054 aaKnown RBP17.74■□□□□ 0.43
CLN3-213ENST00000565047 FAM227BQ96M60 508 aa17.74■□□□□ 0.43
CLN3-213ENST00000565047 NACAP1Q9BZK3 213 aa17.74■□□□□ 0.43
CLN3-213ENST00000565047 ANAPC4Q9UJX5 808 aa17.74■□□□□ 0.43
CLN3-213ENST00000565047 ZNF214Q9UL59 606 aaPredicted RBP17.74■□□□□ 0.43
CLN3-213ENST00000565047 PPP1R9AQ9ULJ8 1098 aa17.74■□□□□ 0.43
CLN3-213ENST00000565047 SUPT16HQ9Y5B9 1047 aaKnown RBP17.74■□□□□ 0.43
CLN3-213ENST00000565047 A0A0D9SFI3 127 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 H0YGN5 161 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 VWA5AO00534 786 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 STRNO43815 780 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 COBLO75128 1261 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 NDUFB10O96000 172 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 CCND3P30281 292 aaPredicted RBP17.73■□□□□ 0.43
CLN3-213ENST00000565047 ATP2B2Q01814 1243 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 ALX1Q15699 326 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 FAM83BQ5T0W9 1011 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 ZNF444Q8N0Y2 327 aaPredicted RBP17.73■□□□□ 0.43
CLN3-213ENST00000565047 ABRAQ8N0Z2 381 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 NUP88Q99567 741 aaPredicted RBP17.73■□□□□ 0.43
CLN3-213ENST00000565047 NAPBQ9H115 298 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 GOPCQ9HD26 462 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 INCENPQ9NQS7 918 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 CLIP2Q9UDT6 1046 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 ZBTB47Q9UFB7 747 aaPredicted RBP17.73■□□□□ 0.43
CLN3-213ENST00000565047 SYNPO2Q9UMS6 1093 aa17.73■□□□□ 0.43
CLN3-213ENST00000565047 RANBP2P49792 3224 aaKnown RBP17.72■□□□□ 0.43
CLN3-213ENST00000565047 ADORA2AP29274 412 aa17.72■□□□□ 0.43
CLN3-213ENST00000565047 NOVP48745 357 aa17.72■□□□□ 0.43
CLN3-213ENST00000565047 B4GALNT3Q6L9W6 998 aa17.72■□□□□ 0.43
CLN3-213ENST00000565047 TRPV1Q8NER1 839 aa17.72■□□□□ 0.43
CLN3-213ENST00000565047 PAWRQ96IZ0 340 aaKnown RBP17.72■□□□□ 0.43
CLN3-213ENST00000565047 MROH8Q9H579 483 aa17.72■□□□□ 0.43
CLN3-213ENST00000565047 ZNF287Q9HBT7 754 aa17.72■□□□□ 0.43
CLN3-213ENST00000565047 MCMDC2Q4G0Z9 681 aa17.71■□□□□ 0.43
CLN3-213ENST00000565047 FAM47AQ5JRC9 791 aa17.71■□□□□ 0.43
CLN3-213ENST00000565047 WDR78Q5VTH9 848 aa17.71■□□□□ 0.43
CLN3-213ENST00000565047 ZNF589Q86UQ0 364 aaPredicted RBP17.71■□□□□ 0.43
CLN3-213ENST00000565047 RIOX2Q8IUF8 465 aa17.71■□□□□ 0.43
CLN3-213ENST00000565047 GMCL1P1Q8NEA9 526 aa17.71■□□□□ 0.43
CLN3-213ENST00000565047 IL17RBQ9NRM6 502 aa17.71■□□□□ 0.43
CLN3-213ENST00000565047 IVNS1ABPQ9Y6Y0 642 aa17.71■□□□□ 0.43
CLN3-213ENST00000565047 COL11A1P12107 1806 aaPredicted RBP17.7■□□□□ 0.42
CLN3-213ENST00000565047 TTLL1O95922 423 aa17.7■□□□□ 0.42
CLN3-213ENST00000565047 FGAP02671 866 aa17.7■□□□□ 0.42
CLN3-213ENST00000565047 TFAP4Q01664 338 aa17.7■□□□□ 0.42
CLN3-213ENST00000565047 CTDSPL2Q05D32 466 aa17.7■□□□□ 0.42
CLN3-213ENST00000565047 PDE4BQ07343 736 aa17.7■□□□□ 0.42
CLN3-213ENST00000565047 HABP4Q5JVS0 413 aaKnown RBP17.7■□□□□ 0.42
CLN3-213ENST00000565047 OLFML2BQ68BL8 750 aa17.7■□□□□ 0.42
CLN3-213ENST00000565047 HTATIP2Q9BUP3 242 aa17.7■□□□□ 0.42
CLN3-213ENST00000565047 PRO3102Q9H379 93 aa17.7■□□□□ 0.42
CLN3-213ENST00000565047 SLC25A27O95847 323 aa17.69■□□□□ 0.42
CLN3-213ENST00000565047 HSPD1P10809 573 aaKnown RBP17.69■□□□□ 0.42
CLN3-213ENST00000565047 COL6A1P12109 1028 aa17.69■□□□□ 0.42
CLN3-213ENST00000565047 CYP2C19P33261 490 aa17.69■□□□□ 0.42
CLN3-213ENST00000565047 NMIQ13287 307 aaPredicted RBP17.69■□□□□ 0.42
CLN3-213ENST00000565047 NECAB2Q7Z6G3 386 aa17.69■□□□□ 0.42
CLN3-213ENST00000565047 NCAPG2Q86XI2 1143 aa17.69■□□□□ 0.42
CLN3-213ENST00000565047 DPF3Q92784 378 aa17.69■□□□□ 0.42
CLN3-213ENST00000565047 SLF1Q9BQI6 1058 aa17.69■□□□□ 0.42
CLN3-213ENST00000565047 CWC22Q9HCG8 908 aaKnown RBP17.69■□□□□ 0.42
CLN3-213ENST00000565047 COLQQ9Y215 455 aaPredicted RBP17.69■□□□□ 0.42
CLN3-213ENST00000565047 ZMYM6O95789 1325 aa17.69■□□□□ 0.42
CLN3-213ENST00000565047 ATP2A1O14983 1001 aa17.68■□□□□ 0.42
CLN3-213ENST00000565047 TSPY3P0CV98 308 aa17.68■□□□□ 0.42
CLN3-213ENST00000565047 TSPY8P0CW00 308 aa17.68■□□□□ 0.42
CLN3-213ENST00000565047 CYBAP13498 195 aa17.68■□□□□ 0.42
CLN3-213ENST00000565047 SDSP20132 328 aa17.68■□□□□ 0.42
CLN3-213ENST00000565047 STAT3P40763 770 aa17.68■□□□□ 0.42
CLN3-213ENST00000565047 PLS1Q14651 629 aa17.68■□□□□ 0.42
CLN3-213ENST00000565047 MFSD14CQ5VZR4 134 aa17.68■□□□□ 0.42
CLN3-213ENST00000565047 LRRC47Q8N1G4 583 aaKnown RBP17.68■□□□□ 0.42
CLN3-213ENST00000565047 PRPF38AQ8NAV1 312 aaKnown RBP17.68■□□□□ 0.42
CLN3-213ENST00000565047 NBPF3Q9H094 633 aa17.68■□□□□ 0.42
CLN3-213ENST00000565047 ALPK3Q96L96 1907 aa17.68■□□□□ 0.42
CLN3-213ENST00000565047 PFASO15067 1338 aa17.68■□□□□ 0.42
CLN3-213ENST00000565047 MYH4Q9Y623 1939 aa17.67■□□□□ 0.42
CLN3-213ENST00000565047 ORC4O43929 436 aa17.67■□□□□ 0.42
CLN3-213ENST00000565047 SLC3A2P08195 630 aaKnown RBP17.67■□□□□ 0.42
CLN3-213ENST00000565047 DPP9Q86TI2 863 aa17.67■□□□□ 0.42
CLN3-213ENST00000565047 MAML3Q96JK9 1138 aa17.67■□□□□ 0.42
CLN3-213ENST00000565047 SLC38A10Q9HBR0 1119 aa17.67■□□□□ 0.42
CLN3-213ENST00000565047 RIPK3Q9Y572 518 aa17.67■□□□□ 0.42
CLN3-213ENST00000565047 CEP290O15078 2479 aa17.66■□□□□ 0.42
CLN3-213ENST00000565047 NMT2O60551 498 aa17.66■□□□□ 0.42
CLN3-213ENST00000565047 FCER1AP12319 257 aa17.66■□□□□ 0.42
CLN3-213ENST00000565047 PDE4AP27815 886 aa17.66■□□□□ 0.42
CLN3-213ENST00000565047 ZNF792Q3KQV3 632 aa17.66■□□□□ 0.42
CLN3-213ENST00000565047 SAMD1Q6SPF0 538 aaPredicted RBP17.66■□□□□ 0.42
CLN3-213ENST00000565047 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.66■□□□□ 0.42
CLN3-213ENST00000565047 RILPL2Q969X0 211 aa17.66■□□□□ 0.42
CLN3-213ENST00000565047 GMCL1Q96IK5 515 aa17.66■□□□□ 0.42
CLN3-213ENST00000565047 DDX20Q9UHI6 824 aaKnown RBP17.66■□□□□ 0.42
CLN3-213ENST00000565047 FEM1BQ9UK73 627 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms