RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 ORC3Q9UBD5 711 aaPredicted RBP14.87□□□□□ -0.03
CLK3-214ENST00000564096 SEC63Q9UGP8 760 aaKnown RBP14.87□□□□□ -0.03
CLK3-214ENST00000564096 MAD2L2Q9UI95 211 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 OTOFQ9HC10 1997 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 CNTNAP5Q8WYK1 1306 aa14.87□□□□□ -0.03
CLK3-214ENST00000564096 MYH4Q9Y623 1939 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 A0A1W2PRG0 241 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 KLRF2D3W0D1 207 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 WDR46O15213 610 aaKnown RBP14.86□□□□□ -0.03
CLK3-214ENST00000564096 PLEKHA8P1O95397 391 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 CTDNEP1O95476 244 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 BMP3P12645 472 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 XBP1P17861 261 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 NUCB2P80303 420 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 IKQ13123 557 aaPredicted RBP14.86□□□□□ -0.03
CLK3-214ENST00000564096 MTMR2Q13614 643 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 TRIM29Q14134 588 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 NTRK3Q16288 839 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 USP17L2Q6R6M4 530 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 DLK2Q6UY11 383 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.86□□□□□ -0.03
CLK3-214ENST00000564096 ERO1BQ86YB8 467 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 SIAH1Q8IUQ4 282 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 ACER1Q8TDN7 264 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 TMOD4Q9NZQ9 345 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 CHMP5Q9NZZ3 219 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.86□□□□□ -0.03
CLK3-214ENST00000564096 FZD1Q9UP38 647 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 ZHX2Q9Y6X8 837 aa14.86□□□□□ -0.03
CLK3-214ENST00000564096 FRMPD2Q68DX3 1309 aaPredicted RBP14.86□□□□□ -0.03
CLK3-214ENST00000564096 SPDYE5A6NIY4 337 aa14.85□□□□□ -0.03
CLK3-214ENST00000564096 TRIM75PA6NK02 468 aa14.85□□□□□ -0.03
CLK3-214ENST00000564096 C19orf81C9J6K1 198 aa14.85□□□□□ -0.03
CLK3-214ENST00000564096 GOLGA8HP0CJ92 632 aa14.85□□□□□ -0.03
CLK3-214ENST00000564096 BACE1P56817 501 aa14.85□□□□□ -0.03
CLK3-214ENST00000564096 PPATQ06203 517 aa14.85□□□□□ -0.03
CLK3-214ENST00000564096 ZYXQ15942 572 aaKnown RBP14.85□□□□□ -0.03
CLK3-214ENST00000564096 CCDC84Q86UT8 332 aaPredicted RBP14.85□□□□□ -0.03
CLK3-214ENST00000564096 RGS22Q8NE09 1264 aa14.85□□□□□ -0.03
CLK3-214ENST00000564096 PHKBQ93100 1093 aa14.85□□□□□ -0.03
CLK3-214ENST00000564096 RRP36Q96EU6 259 aaKnown RBP14.85□□□□□ -0.03
CLK3-214ENST00000564096 ELP3Q9H9T3 547 aa14.85□□□□□ -0.03
CLK3-214ENST00000564096 H3BQV1 296 aa14.84□□□□□ -0.03
CLK3-214ENST00000564096 hCG_1984214I3L0E3 225 aa14.84□□□□□ -0.03
CLK3-214ENST00000564096 PRPF3O43395 683 aaKnown RBP14.84□□□□□ -0.03
CLK3-214ENST00000564096 STAT2P52630 851 aa14.84□□□□□ -0.03
CLK3-214ENST00000564096 SPP2Q13103 211 aa14.84□□□□□ -0.03
CLK3-214ENST00000564096 PPIL2Q13356 520 aa14.84□□□□□ -0.03
CLK3-214ENST00000564096 LARP1BQ659C4 914 aaKnown RBP14.84□□□□□ -0.03
CLK3-214ENST00000564096 FAM160B2Q86V87 743 aa14.84□□□□□ -0.03
CLK3-214ENST00000564096 SPICE1Q8N0Z3 855 aa14.84□□□□□ -0.03
CLK3-214ENST00000564096 CCDC82Q8N4S0 544 aa14.84□□□□□ -0.03
CLK3-214ENST00000564096 ZNF713Q8N859 430 aaPredicted RBP14.84□□□□□ -0.03
CLK3-214ENST00000564096 C12orf42Q96LP6 360 aa14.84□□□□□ -0.03
CLK3-214ENST00000564096 ALG1Q9BT22 464 aa14.84□□□□□ -0.03
CLK3-214ENST00000564096 GPCPD1Q9NPB8 672 aa14.84□□□□□ -0.03
CLK3-214ENST00000564096 WDR33Q9C0J8 1336 aaKnown RBP14.84□□□□□ -0.03
CLK3-214ENST00000564096 VPS37CA5D8V6 355 aaPredicted RBP14.83□□□□□ -0.04
CLK3-214ENST00000564096 STX6O43752 255 aa14.83□□□□□ -0.04
CLK3-214ENST00000564096 DDIT3P35638 169 aa14.83□□□□□ -0.04
CLK3-214ENST00000564096 FUT2Q10981 343 aa14.83□□□□□ -0.04
CLK3-214ENST00000564096 FAM83BQ5T0W9 1011 aa14.83□□□□□ -0.04
CLK3-214ENST00000564096 LDLRAD1Q5T700 205 aa14.83□□□□□ -0.04
CLK3-214ENST00000564096 KCTD1Q719H9 257 aa14.83□□□□□ -0.04
CLK3-214ENST00000564096 RASGRP2Q7LDG7 609 aa14.83□□□□□ -0.04
CLK3-214ENST00000564096 NBPF11Q86T75 865 aa14.83□□□□□ -0.04
CLK3-214ENST00000564096 FAM177A1Q8N128 213 aaPredicted RBP14.83□□□□□ -0.04
CLK3-214ENST00000564096 STAG2Q8N3U4 1231 aa14.83□□□□□ -0.04
CLK3-214ENST00000564096 SRBD1Q8N5C6 995 aaKnown RBP14.83□□□□□ -0.04
CLK3-214ENST00000564096 CCDC12Q8WUD4 166 aaPredicted RBP14.83□□□□□ -0.04
CLK3-214ENST00000564096 OTUD5Q96G74 571 aa14.83□□□□□ -0.04
CLK3-214ENST00000564096 C8orf76Q96K31 380 aa14.83□□□□□ -0.04
CLK3-214ENST00000564096 POLR2AP24928 1970 aaKnown RBP14.82□□□□□ -0.04
CLK3-214ENST00000564096 TMEM232C9JQI7 657 aa14.82□□□□□ -0.04
CLK3-214ENST00000564096 KIF3CO14782 793 aa14.82□□□□□ -0.04
CLK3-214ENST00000564096 ITGBL1O95965 494 aaPredicted RBP14.82□□□□□ -0.04
CLK3-214ENST00000564096 VCAM1P19320 739 aa14.82□□□□□ -0.04
CLK3-214ENST00000564096 CMTR1Q8N1G2 835 aaKnown RBP14.82□□□□□ -0.04
CLK3-214ENST00000564096 CCDC148Q8NFR7 591 aa14.82□□□□□ -0.04
CLK3-214ENST00000564096 CHURC1Q8WUH1 139 aa14.82□□□□□ -0.04
CLK3-214ENST00000564096 OPTNQ96CV9 577 aa14.82□□□□□ -0.04
CLK3-214ENST00000564096 TANGO6Q9C0B7 1094 aa14.82□□□□□ -0.04
CLK3-214ENST00000564096 FEM1BQ9UK73 627 aa14.82□□□□□ -0.04
CLK3-214ENST00000564096 AFG3L2Q9Y4W6 797 aa14.82□□□□□ -0.04
CLK3-214ENST00000564096 UBE2Q2LH0YL09 131 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 CXCL11O14625 94 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 PLA2G6O60733 806 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 PPFIA3O75145 1194 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 TOMM70O94826 608 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 SCG2P13521 617 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 FDPSP14324 419 aaKnown RBP14.81□□□□□ -0.04
CLK3-214ENST00000564096 SYT1P21579 422 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 HMGCS2P54868 508 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 TRAF1Q13077 416 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 SAFBQ15424 915 aaKnown RBP eCLIP14.81□□□□□ -0.04
CLK3-214ENST00000564096 PFKFB3Q16875 520 aaPredicted RBP14.81□□□□□ -0.04
CLK3-214ENST00000564096 SYDE2Q5VT97 1194 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 BTNL9Q6UXG8 535 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 MOB2Q70IA6 237 aa14.81□□□□□ -0.04
CLK3-214ENST00000564096 HOMER1Q86YM7 354 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms