RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 KIF2CQ99661 725 aa6.89□□□□□ -1.31
VPS35-205ENST00000563984 ASPNQ9BXN1 380 aa6.89□□□□□ -1.31
VPS35-205ENST00000563984 GPR62Q9BZJ7 368 aa6.89□□□□□ -1.31
VPS35-205ENST00000563984 RECKO95980 971 aa6.88□□□□□ -1.31
VPS35-205ENST00000563984 RAG1P15918 1043 aa6.88□□□□□ -1.31
VPS35-205ENST00000563984 CHMP4BP1P59074 171 aa6.88□□□□□ -1.31
VPS35-205ENST00000563984 LRRFIP1Q32MZ4 808 aaKnown RBP6.88□□□□□ -1.31
VPS35-205ENST00000563984 CDCP2Q5VXM1 449 aa6.88□□□□□ -1.31
VPS35-205ENST00000563984 CCDC120Q96HB5 630 aa6.88□□□□□ -1.31
VPS35-205ENST00000563984 KREMEN1Q96MU8 473 aa6.88□□□□□ -1.31
VPS35-205ENST00000563984 DUSP15Q9H1R2 295 aaPredicted RBP6.88□□□□□ -1.31
VPS35-205ENST00000563984 GPATCH2Q9NW75 528 aa6.88□□□□□ -1.31
VPS35-205ENST00000563984 CTNND2Q9UQB3 1225 aa6.88□□□□□ -1.31
VPS35-205ENST00000563984 SRFP11831 508 aa6.87□□□□□ -1.31
VPS35-205ENST00000563984 MCM4P33991 863 aa6.87□□□□□ -1.31
VPS35-205ENST00000563984 CLCQ05315 142 aa6.87□□□□□ -1.31
VPS35-205ENST00000563984 ZNF394Q53GI3 561 aa6.87□□□□□ -1.31
VPS35-205ENST00000563984 PRR23BQ6ZRT6 265 aa6.87□□□□□ -1.31
VPS35-205ENST00000563984 GK5Q6ZS86 529 aa6.87□□□□□ -1.31
VPS35-205ENST00000563984 YTHDC1Q96MU7 727 aaKnown RBP6.87□□□□□ -1.31
VPS35-205ENST00000563984 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS35-205ENST00000563984 CNNM2Q9H8M5 875 aa6.87□□□□□ -1.31
VPS35-205ENST00000563984 HOXA5P20719 270 aa6.86□□□□□ -1.31
VPS35-205ENST00000563984 TPP2P29144 1249 aaPredicted RBP6.86□□□□□ -1.31
VPS35-205ENST00000563984 DEKP35659 375 aaKnown RBP6.86□□□□□ -1.31
VPS35-205ENST00000563984 CCNFP41002 786 aa6.86□□□□□ -1.31
VPS35-205ENST00000563984 RNF4P78317 190 aa6.86□□□□□ -1.31
VPS35-205ENST00000563984 RAD51AP2Q09MP3 1159 aa6.86□□□□□ -1.31
VPS35-205ENST00000563984 OVOS1Q6IE37 1185 aa6.86□□□□□ -1.31
VPS35-205ENST00000563984 RGS22Q8NE09 1264 aa6.86□□□□□ -1.31
VPS35-205ENST00000563984 VWCEQ96DN2 955 aa6.86□□□□□ -1.31
VPS35-205ENST00000563984 ATG4CQ96DT6 458 aa6.86□□□□□ -1.31
VPS35-205ENST00000563984 MRRFQ96E11 262 aaKnown RBP6.86□□□□□ -1.31
VPS35-205ENST00000563984 CWC22Q9HCG8 908 aaKnown RBP6.86□□□□□ -1.31
VPS35-205ENST00000563984 DDX41Q9UJV9 622 aaKnown RBP6.86□□□□□ -1.31
VPS35-205ENST00000563984 MEIS3P2A8K0S8 358 aa6.85□□□□□ -1.31
VPS35-205ENST00000563984 WASH4PA8MWX3 477 aa6.85□□□□□ -1.31
VPS35-205ENST00000563984 ESR1P03372 595 aa6.85□□□□□ -1.31
VPS35-205ENST00000563984 MCCP23508 829 aa6.85□□□□□ -1.31
VPS35-205ENST00000563984 GAB4Q2WGN9 574 aa6.85□□□□□ -1.31
VPS35-205ENST00000563984 NLRC3Q7RTR2 1065 aa6.85□□□□□ -1.31
VPS35-205ENST00000563984 TSPYL5Q86VY4 417 aaPredicted RBP6.85□□□□□ -1.31
VPS35-205ENST00000563984 IPO4Q8TEX9 1081 aaKnown RBP6.85□□□□□ -1.31
VPS35-205ENST00000563984 ALPK1Q96QP1 1244 aa6.85□□□□□ -1.31
VPS35-205ENST00000563984 PCDHGB7Q9Y5F8 929 aa6.85□□□□□ -1.31
VPS35-205ENST00000563984 LRRN2O75325 713 aa6.84□□□□□ -1.31
VPS35-205ENST00000563984 UBOX5O94941 541 aa6.84□□□□□ -1.31
VPS35-205ENST00000563984 IMPDH2P12268 514 aa6.84□□□□□ -1.31
VPS35-205ENST00000563984 GDNFP39905 211 aa6.84□□□□□ -1.31
VPS35-205ENST00000563984 AFMP43652 599 aa6.84□□□□□ -1.31
VPS35-205ENST00000563984 RBM25P49756 843 aaKnown RBP6.84□□□□□ -1.31
VPS35-205ENST00000563984 RACK1P63244 317 aaKnown RBP6.84□□□□□ -1.31
VPS35-205ENST00000563984 CREG2Q8IUH2 290 aa6.84□□□□□ -1.31
VPS35-205ENST00000563984 ZNF654Q8IZM8 581 aa6.84□□□□□ -1.31
VPS35-205ENST00000563984 C19orf73Q9NVV2 129 aa6.84□□□□□ -1.31
VPS35-205ENST00000563984 USP35Q9P2H5 1018 aa6.84□□□□□ -1.31
VPS35-205ENST00000563984 NAP1L2Q9ULW6 460 aaPredicted RBP6.84□□□□□ -1.31
VPS35-205ENST00000563984 NPIPB6E9PJ23 425 aa6.83□□□□□ -1.32
VPS35-205ENST00000563984 NFIBO00712 420 aa6.83□□□□□ -1.32
VPS35-205ENST00000563984 PTMAP06454 111 aaKnown RBP6.83□□□□□ -1.32
VPS35-205ENST00000563984 NME1P15531 152 aaKnown RBP6.83□□□□□ -1.32
VPS35-205ENST00000563984 TMED8Q6PL24 325 aaPredicted RBP6.83□□□□□ -1.32
VPS35-205ENST00000563984 METTL16Q86W50 562 aaKnown RBP6.83□□□□□ -1.32
VPS35-205ENST00000563984 FAM177A1Q8N128 213 aaPredicted RBP6.83□□□□□ -1.32
VPS35-205ENST00000563984 ENOX1Q8TC92 643 aaKnown RBP6.83□□□□□ -1.32
VPS35-205ENST00000563984 RELTQ969Z4 430 aa6.83□□□□□ -1.32
VPS35-205ENST00000563984 KIRREL1Q96J84 757 aa6.83□□□□□ -1.32
VPS35-205ENST00000563984 ASCC2Q9H1I8 757 aaPredicted RBP6.83□□□□□ -1.32
VPS35-205ENST00000563984 SLAMF8Q9P0V8 285 aa6.83□□□□□ -1.32
VPS35-205ENST00000563984 DUSP13Q9UII6 198 aa6.83□□□□□ -1.32
VPS35-205ENST00000563984 ZNRF3Q9ULT6 936 aa6.83□□□□□ -1.32
VPS35-205ENST00000563984 TNFRSF10CO14798 259 aa6.82□□□□□ -1.32
VPS35-205ENST00000563984 PPM1GO15355 546 aaPredicted RBP6.82□□□□□ -1.32
VPS35-205ENST00000563984 COL9A2Q14055 689 aaPredicted RBP6.82□□□□□ -1.32
VPS35-205ENST00000563984 NBPF12Q5TAG4 269 aaPredicted RBP6.82□□□□□ -1.32
VPS35-205ENST00000563984 INTS3Q68E01 1043 aaKnown RBP6.82□□□□□ -1.32
VPS35-205ENST00000563984 CNPY4Q8N129 248 aa6.82□□□□□ -1.32
VPS35-205ENST00000563984 SPATA32Q96LK8 384 aa6.82□□□□□ -1.32
VPS35-205ENST00000563984 CLEC3AO75596 197 aa6.81□□□□□ -1.32
VPS35-205ENST00000563984 POLR2BP30876 1174 aaKnown RBP6.81□□□□□ -1.32
VPS35-205ENST00000563984 CLEC16AQ2KHT3 1053 aa6.81□□□□□ -1.32
VPS35-205ENST00000563984 MPZL3Q6UWV2 235 aa6.81□□□□□ -1.32
VPS35-205ENST00000563984 ANTXR1Q9H6X2 564 aa6.81□□□□□ -1.32
VPS35-205ENST00000563984 KCNK12Q9HB15 430 aa6.81□□□□□ -1.32
VPS35-205ENST00000563984 KIAA1522Q9P206 1035 aaPredicted RBP6.81□□□□□ -1.32
VPS35-205ENST00000563984 TMEM59LQ9UK28 342 aa6.81□□□□□ -1.32
VPS35-205ENST00000563984 DNAJC25-GNG10A0A024R161 153 aa6.8□□□□□ -1.32
VPS35-205ENST00000563984 GLI1P08151 1106 aa6.8□□□□□ -1.32
VPS35-205ENST00000563984 LTKP29376 864 aa6.8□□□□□ -1.32
VPS35-205ENST00000563984 ERVFC1P60507 584 aa6.8□□□□□ -1.32
VPS35-205ENST00000563984 EGR3Q06889 387 aa6.8□□□□□ -1.32
VPS35-205ENST00000563984 NBPF9Q3BBW0 867 aa6.8□□□□□ -1.32
VPS35-205ENST00000563984 RALGPS1Q5JS13 557 aa6.8□□□□□ -1.32
VPS35-205ENST00000563984 DBX2Q6ZNG2 339 aa6.8□□□□□ -1.32
VPS35-205ENST00000563984 TTC6Q86TZ1 520 aa6.8□□□□□ -1.32
VPS35-205ENST00000563984 TAB3Q8N5C8 712 aaPredicted RBP6.8□□□□□ -1.32
VPS35-205ENST00000563984 SYTL5Q8TDW5 730 aaPredicted RBP6.8□□□□□ -1.32
VPS35-205ENST00000563984 FERD3LQ96RJ6 166 aa6.8□□□□□ -1.32
VPS35-205ENST00000563984 PRDM16Q9HAZ2 1276 aa6.8□□□□□ -1.32
VPS35-205ENST00000563984 UNCXA6NJT0 531 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms