RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 VEGFAP15692 232 aaPredicted RBP15.73■□□□□ 0.11
VPS39-206ENST00000562662 KLRC3Q07444 240 aa15.73■□□□□ 0.11
VPS39-206ENST00000562662 FBXO18Q8NFZ0 1043 aa15.73■□□□□ 0.11
VPS39-206ENST00000562662 WASF1Q92558 559 aa15.73■□□□□ 0.11
VPS39-206ENST00000562662 GMCL1Q96IK5 515 aa15.73■□□□□ 0.11
VPS39-206ENST00000562662 C8orf76Q96K31 380 aa15.73■□□□□ 0.11
VPS39-206ENST00000562662 CPVLQ9H3G5 476 aa15.73■□□□□ 0.11
VPS39-206ENST00000562662 GJB4Q9NTQ9 266 aa15.73■□□□□ 0.11
VPS39-206ENST00000562662 V9GY48 417 aaPredicted RBP15.73■□□□□ 0.11
VPS39-206ENST00000562662 hCG_1642624A0A1W2PR95 340 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 H3BQV1 296 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 AKAP17AQ02040 695 aaKnown RBP15.72■□□□□ 0.11
VPS39-206ENST00000562662 CCDC96Q2M329 555 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 KIAA1755Q5JYT7 1200 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 GPATCH4Q5T3I0 446 aaKnown RBP15.72■□□□□ 0.11
VPS39-206ENST00000562662 IFFO2Q5TF58 517 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 OTUD7BQ6GQQ9 843 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 CLEC17AQ6ZS10 378 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 KCTD1Q719H9 257 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 ZKSCAN4Q969J2 545 aaPredicted RBP15.72■□□□□ 0.11
VPS39-206ENST00000562662 RIOX1Q9H6W3 641 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 SH2D4AQ9H788 454 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 VCPKMTQ9H867 229 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 GPCPD1Q9NPB8 672 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 CLEC11AQ9Y240 323 aa15.72■□□□□ 0.11
VPS39-206ENST00000562662 TRPM7Q96QT4 1865 aa15.71■□□□□ 0.11
VPS39-206ENST00000562662 SLC1A4P43007 532 aa15.71■□□□□ 0.11
VPS39-206ENST00000562662 GUCY1B3Q02153 619 aa15.71■□□□□ 0.11
VPS39-206ENST00000562662 RESTQ13127 1097 aa15.71■□□□□ 0.11
VPS39-206ENST00000562662 PRKG1Q13976 671 aa15.71■□□□□ 0.11
VPS39-206ENST00000562662 PFKFB3Q16875 520 aaPredicted RBP15.71■□□□□ 0.11
VPS39-206ENST00000562662 KRT40Q6A162 431 aa15.71■□□□□ 0.11
VPS39-206ENST00000562662 TTBK2Q6IQ55 1244 aa15.71■□□□□ 0.11
VPS39-206ENST00000562662 SHISA4Q96DD7 197 aa15.71■□□□□ 0.11
VPS39-206ENST00000562662 UBA5Q9GZZ9 404 aa15.71■□□□□ 0.11
VPS39-206ENST00000562662 GOPCQ9HD26 462 aa15.71■□□□□ 0.11
VPS39-206ENST00000562662 NMRK2Q9NPI5 230 aa15.71■□□□□ 0.11
VPS39-206ENST00000562662 RBM27Q9P2N5 1060 aaKnown RBP15.71■□□□□ 0.11
VPS39-206ENST00000562662 PPP1R12BO60237 982 aaPredicted RBP15.7■□□□□ 0.1
VPS39-206ENST00000562662 PTPRAP18433 802 aa15.7■□□□□ 0.1
VPS39-206ENST00000562662 NF2P35240 595 aa15.7■□□□□ 0.1
VPS39-206ENST00000562662 MAP3K9P80192 1104 aa15.7■□□□□ 0.1
VPS39-206ENST00000562662 MAP3K11Q16584 847 aa15.7■□□□□ 0.1
VPS39-206ENST00000562662 MAP1SQ66K74 1059 aaPredicted RBP15.7■□□□□ 0.1
VPS39-206ENST00000562662 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.7■□□□□ 0.1
VPS39-206ENST00000562662 FERMT3Q86UX7 667 aa15.7■□□□□ 0.1
VPS39-206ENST00000562662 LDHDQ86WU2 507 aa15.7■□□□□ 0.1
VPS39-206ENST00000562662 WDR18Q9BV38 432 aa15.7■□□□□ 0.1
VPS39-206ENST00000562662 SNCAIPQ9Y6H5 919 aa15.7■□□□□ 0.1
VPS39-206ENST00000562662 RAD21O60216 631 aa15.69■□□□□ 0.1
VPS39-206ENST00000562662 BAG4O95429 457 aaKnown RBP15.69■□□□□ 0.1
VPS39-206ENST00000562662 BMP3P12645 472 aa15.69■□□□□ 0.1
VPS39-206ENST00000562662 SCG2P13521 617 aa15.69■□□□□ 0.1
VPS39-206ENST00000562662 IREB2P48200 963 aaKnown RBP15.69■□□□□ 0.1
VPS39-206ENST00000562662 PIBF1Q8WXW3 757 aa15.69■□□□□ 0.1
VPS39-206ENST00000562662 MTMR8Q96EF0 704 aa15.69■□□□□ 0.1
VPS39-206ENST00000562662 NUP88Q99567 741 aaPredicted RBP15.69■□□□□ 0.1
VPS39-206ENST00000562662 KIAA1683Q9H0B3 1180 aa15.69■□□□□ 0.1
VPS39-206ENST00000562662 PICK1Q9NRD5 415 aa15.69■□□□□ 0.1
VPS39-206ENST00000562662 LOC285556D6RIA3 1793 aa15.69■□□□□ 0.1
VPS39-206ENST00000562662 RLFQ13129 1914 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 SLC16A2P36021 539 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 VGLL4Q14135 290 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 ZYXQ15942 572 aaKnown RBP15.68■□□□□ 0.1
VPS39-206ENST00000562662 BTNL9Q6UXG8 535 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 ADGRF4Q8IZF3 695 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 SPICE1Q8N0Z3 855 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 RRP36Q96EU6 259 aaKnown RBP15.68■□□□□ 0.1
VPS39-206ENST00000562662 CHAMP1Q96JM3 812 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 PIGSQ96S52 555 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 FEZ1Q99689 392 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 JMJD4Q9H9V9 463 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 AS3MTQ9HBK9 375 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 VPS54Q9P1Q0 977 aa15.68■□□□□ 0.1
VPS39-206ENST00000562662 SMCHD1A6NHR9 2005 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 KIF28PB7ZC32 967 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 USP17L10C9JJH3 530 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 MMP1P03956 469 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 KIF23Q02241 960 aaPredicted RBP15.67■□□□□ 0.1
VPS39-206ENST00000562662 TRIM29Q14134 588 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 NFKBIBQ15653 356 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 FAM83BQ5T0W9 1011 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 WWC2Q6AWC2 1192 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 MOB2Q70IA6 237 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 ZNF280CQ8ND82 737 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 ZNF526Q8TF50 670 aaPredicted RBP15.67■□□□□ 0.1
VPS39-206ENST00000562662 GBP4Q96PP9 640 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 PHF20Q9BVI0 1012 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 ZSCAN16Q9H4T2 348 aaPredicted RBP15.67■□□□□ 0.1
VPS39-206ENST00000562662 VAT1LQ9HCJ6 419 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 KCNJ14Q9UNX9 436 aa15.67■□□□□ 0.1
VPS39-206ENST00000562662 TMEM232C9JQI7 657 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 TRAF5O00463 557 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 PLA2G6O60733 806 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 XBP1P17861 261 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 FMR1Q06787 632 aaKnown RBP eCLIP15.66■□□□□ 0.1
VPS39-206ENST00000562662 SPP2Q13103 211 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 MTMR2Q13614 643 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 MCTP1Q6DN14 999 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 TYW1BQ6NUM6 668 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms