RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 FRMPD2Q68DX3 1309 aaPredicted RBP11.51□□□□□ -0.57
CLK3-208ENST00000562626 SPDYE16A6NNV3 312 aaPredicted RBP11.5□□□□□ -0.57
CLK3-208ENST00000562626 USP17L15C9J2P7 530 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 USP17L13C9JLJ4 530 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 USP17L11C9JVI0 530 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 USP17L18D6R9N7 530 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 USP17L22D6RA61 530 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 USP17L17D6RBQ6 530 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 USP17L19D6RCP7 530 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 USP17L20D6RJB6 530 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 ECM2O94769 699 aaPredicted RBP11.5□□□□□ -0.57
CLK3-208ENST00000562626 SNHG28P0DPA3 235 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 PDHBP11177 359 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 BCRP11274 1271 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 TAL1P17542 331 aaPredicted RBP11.5□□□□□ -0.57
CLK3-208ENST00000562626 CASTP20810 708 aaKnown RBP11.5□□□□□ -0.57
CLK3-208ENST00000562626 MCM5P33992 734 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 HERVK_113P62684 666 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 USP17L24Q0WX57 530 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 TMEM67Q5HYA8 995 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 IQCA1Q86XH1 822 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 PNMA1Q8ND90 353 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 LPAR1Q92633 364 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 ATG4CQ96DT6 458 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 IL17RAQ96F46 866 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 TTC14Q96N46 770 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 UBAC1Q9BSL1 405 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 CFHR5Q9BXR6 569 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 BACH2Q9BYV9 841 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 UPF3BQ9BZI7 483 aaKnown RBP11.5□□□□□ -0.57
CLK3-208ENST00000562626 TANGO6Q9C0B7 1094 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 SH2D4AQ9H788 454 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 ZCCHC17Q9NP64 241 aaKnown RBP11.5□□□□□ -0.57
CLK3-208ENST00000562626 SAGE1Q9NXZ1 904 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 SLC45A1Q9Y2W3 748 aa11.5□□□□□ -0.57
CLK3-208ENST00000562626 LRRC37A2A6NM11 1700 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 ZNF236Q9UL36 1845 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 TLR2O60603 784 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 GOLGA8HP0CJ92 632 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 ZKSCAN1P17029 563 aaPredicted RBP11.49□□□□□ -0.57
CLK3-208ENST00000562626 RXRAP19793 462 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 RPS6KB1P23443 525 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 WTAPQ15007 396 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 IFIT1BQ5T764 474 aaKnown RBP11.49□□□□□ -0.57
CLK3-208ENST00000562626 SAMD1Q6SPF0 538 aaPredicted RBP11.49□□□□□ -0.57
CLK3-208ENST00000562626 C17orf99Q6UX52 265 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 DHX32Q7L7V1 743 aaKnown RBP11.49□□□□□ -0.57
CLK3-208ENST00000562626 STAG2Q8N3U4 1231 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 REPS2Q8NFH8 660 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 GMCL1Q96IK5 515 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 LARP6Q9BRS8 491 aaKnown RBP11.49□□□□□ -0.57
CLK3-208ENST00000562626 ARHGAP39Q9C0H5 1083 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 ZSWIM6Q9HCJ5 1215 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 GPCPD1Q9NPB8 672 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 BTBD7Q9P203 1132 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 RBPJLQ9UBG7 517 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 BRPF3Q9ULD4 1205 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 SYNPO2Q9UMS6 1093 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 FRMPD3Q5JV73 1810 aa11.49□□□□□ -0.57
CLK3-208ENST00000562626 TMEM232C9JQI7 657 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 GPR25O00155 361 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 FLOT1O75955 427 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 ALDH1A1P00352 501 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 BMP3P12645 472 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 DSG3P32926 999 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 SLC16A2P36021 539 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 SNAP25P60880 206 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 IRX3P78415 501 aaPredicted RBP11.48□□□□□ -0.57
CLK3-208ENST00000562626 ZNF543Q08ER8 600 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 TROAPQ12815 778 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 TOB2Q14106 344 aaPredicted RBP11.48□□□□□ -0.57
CLK3-208ENST00000562626 KRT32Q14532 448 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 Q3C1V9 767 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 OTUD7BQ6GQQ9 843 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 BLOC1S2Q6QNY1 142 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 Q6ZUG5 572 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 ANKRD13CQ8N6S4 541 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 PARK7Q99497 189 aaKnown RBP11.48□□□□□ -0.57
CLK3-208ENST00000562626 KAT14Q9H8E8 782 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 ZFYVE28Q9HCC9 887 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 ADAMTS5Q9UNA0 930 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 WDR19Q8NEZ3 1342 aa11.48□□□□□ -0.57
CLK3-208ENST00000562626 OSBPP22059 807 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 SLC1A4P43007 532 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 NT5C2P49902 561 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 APOBRQ0VD83 1088 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 GRM4Q14833 912 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 CCDC96Q2M329 555 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 RUFY3Q7L099 469 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 NBPF11Q86T75 865 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 ZNF654Q8IZM8 581 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 ZNF296Q8WUU4 475 aaPredicted RBP11.47□□□□□ -0.57
CLK3-208ENST00000562626 DCAF4Q8WV16 495 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 TMEM87BQ96K49 555 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 PAGR1Q9BTK6 254 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 AGXT2Q9BYV1 514 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 C22orf23Q9BZE7 217 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 TM6SF1Q9BZW5 370 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 MAD2L2Q9UI95 211 aa11.47□□□□□ -0.57
CLK3-208ENST00000562626 PPP1R9AQ9ULJ8 1098 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms