RNA–Protein interactions for RNA: ENST00000562310.1

COMMD4-205, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 568 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-205ENST00000562310 FOXD4L6Q3SYB3 417 aaPredicted RBP16.48■□□□□ 0.23
COMMD4-205ENST00000562310 SLFN13Q68D06 897 aa16.48■□□□□ 0.23
COMMD4-205ENST00000562310 OTUD7BQ6GQQ9 843 aa16.48■□□□□ 0.23
COMMD4-205ENST00000562310 FOXD4L3Q6VB84 417 aaPredicted RBP16.48■□□□□ 0.23
COMMD4-205ENST00000562310 MIGA2Q7L4E1 593 aa16.48■□□□□ 0.23
COMMD4-205ENST00000562310 CCDC12Q8WUD4 166 aaPredicted RBP16.48■□□□□ 0.23
COMMD4-205ENST00000562310 FOXP1Q9H334 677 aaPredicted RBP16.48■□□□□ 0.23
COMMD4-205ENST00000562310 RIOX1Q9H6W3 641 aa16.48■□□□□ 0.23
COMMD4-205ENST00000562310 GOPCQ9HD26 462 aa16.48■□□□□ 0.23
COMMD4-205ENST00000562310 LMBRD1Q9NUN5 540 aa16.48■□□□□ 0.23
COMMD4-205ENST00000562310 POLR2AP24928 1970 aaKnown RBP16.47■□□□□ 0.23
COMMD4-205ENST00000562310 BAZ2BQ9UIF8 2168 aaKnown RBP16.47■□□□□ 0.23
COMMD4-205ENST00000562310 IQCA1LA6NCM1 817 aa16.47■□□□□ 0.23
COMMD4-205ENST00000562310 FIBPO43427 364 aa16.47■□□□□ 0.23
COMMD4-205ENST00000562310 CTNND1O60716 968 aaKnown RBP16.47■□□□□ 0.23
COMMD4-205ENST00000562310 MBD3O95983 291 aa16.47■□□□□ 0.23
COMMD4-205ENST00000562310 GOLGA8HP0CJ92 632 aa16.47■□□□□ 0.23
COMMD4-205ENST00000562310 SLC1A4P43007 532 aa16.47■□□□□ 0.23
COMMD4-205ENST00000562310 JAG1P78504 1218 aa16.47■□□□□ 0.23
COMMD4-205ENST00000562310 SHROOM1Q2M3G4 852 aaPredicted RBP16.47■□□□□ 0.23
COMMD4-205ENST00000562310 SUPT20HL1Q3ZLR7 823 aa16.47■□□□□ 0.23
COMMD4-205ENST00000562310 SIAH1Q8IUQ4 282 aa16.47■□□□□ 0.23
COMMD4-205ENST00000562310 ZC3H15Q8WU90 426 aaKnown RBP16.47■□□□□ 0.23
COMMD4-205ENST00000562310 DCPSQ96C86 337 aaKnown RBP16.47■□□□□ 0.23
COMMD4-205ENST00000562310 PHF20Q9BVI0 1012 aa16.47■□□□□ 0.23
COMMD4-205ENST00000562310 TMX2Q9Y320 296 aa16.47■□□□□ 0.23
COMMD4-205ENST00000562310 FRMPD2Q68DX3 1309 aaPredicted RBP16.46■□□□□ 0.23
COMMD4-205ENST00000562310 DCAF8L1A6NGE4 600 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 UBE2Q2LH0YL09 131 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 CYTH3O43739 400 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 TRAK2O60296 914 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 PRPF40AO75400 957 aaKnown RBP16.46■□□□□ 0.23
COMMD4-205ENST00000562310 KRT2P35908 639 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 NBPF12Q5TAG4 269 aaPredicted RBP16.46■□□□□ 0.23
COMMD4-205ENST00000562310 MYSM1Q5VVJ2 828 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 GALNT17Q6IS24 598 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 USP48Q86UV5 1035 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 SULF1Q8IWU6 871 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 DIS3L2Q8IYB7 885 aaKnown RBP16.46■□□□□ 0.23
COMMD4-205ENST00000562310 CHAMP1Q96JM3 812 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 GJB4Q9NTQ9 266 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 VPS54Q9P1Q0 977 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 ZNF112Q9UJU3 913 aa16.46■□□□□ 0.23
COMMD4-205ENST00000562310 PAPPA2Q9BXP8 1791 aa16.46■□□□□ 0.22
COMMD4-205ENST00000562310 KIF28PB7ZC32 967 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 F5H6K3 240 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 NDUFB10O96000 172 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 EPHX2P34913 555 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 C1QTNF8P60827 252 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 KLRC3Q07444 240 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 SLC35G1Q2M3R5 365 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 KLHL40Q2TBA0 621 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 PPP1R18Q6NYC8 613 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 RASGRP2Q7LDG7 609 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 NOSTRINQ8IVI9 506 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 SPATA32Q96LK8 384 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 GPCPD1Q9NPB8 672 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 BARHL2Q9NY43 387 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 KCNJ14Q9UNX9 436 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 SSC5DA1L4H1 1573 aa16.45■□□□□ 0.22
COMMD4-205ENST00000562310 GOLGB1Q14789 3259 aaKnown RBP16.44■□□□□ 0.22
COMMD4-205ENST00000562310 hCG_1642624A0A1W2PR95 340 aa16.44■□□□□ 0.22
COMMD4-205ENST00000562310 UBE2HP62256 183 aa16.44■□□□□ 0.22
COMMD4-205ENST00000562310 FAM173BQ6P4H8 233 aa16.44■□□□□ 0.22
COMMD4-205ENST00000562310 DAGLBQ8NCG7 672 aa16.44■□□□□ 0.22
COMMD4-205ENST00000562310 SCAF8Q9UPN6 1271 aaKnown RBP16.44■□□□□ 0.22
COMMD4-205ENST00000562310 DDX49Q9Y6V7 483 aaKnown RBP16.44■□□□□ 0.22
COMMD4-205ENST00000562310 A0A1W2PRG0 241 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 STXBP3O00186 592 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 RAD21O60216 631 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 YEATS4O95619 227 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 BMP3P12645 472 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 NLRP5P59047 1200 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 WWC2Q6AWC2 1192 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 KCTD1Q719H9 257 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 HEATR3Q7Z4Q2 680 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 SCYL3Q8IZE3 742 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 LEO1Q8WVC0 666 aaPredicted RBP16.43■□□□□ 0.22
COMMD4-205ENST00000562310 VCPKMTQ9H867 229 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 AS3MTQ9HBK9 375 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 GDPD2Q9HCC8 539 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 POLR3EQ9NVU0 708 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 RTEL1Q9NZ71 1219 aa16.43■□□□□ 0.22
COMMD4-205ENST00000562310 ISY1Q9ULR0 285 aaKnown RBP16.43■□□□□ 0.22
COMMD4-205ENST00000562310 PHIPQ8WWQ0 1821 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 OTOFQ9HC10 1997 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 PNMA6FA0A0J9YX94 578 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 ESYT2A0FGR8 921 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 BTBD18B2RXH4 712 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 RILPL1Q5EBL4 403 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 NOL9Q5SY16 702 aaKnown RBP16.42■□□□□ 0.22
COMMD4-205ENST00000562310 BTNL9Q6UXG8 535 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 PNMA8AQ86V59 439 aaPredicted RBP16.42■□□□□ 0.22
COMMD4-205ENST00000562310 HOMER1Q86YM7 354 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 ADGRF4Q8IZF3 695 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 PIBF1Q8WXW3 757 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 GPKOWQ92917 476 aaPredicted RBP eCLIP16.42■□□□□ 0.22
COMMD4-205ENST00000562310 MTMR8Q96EF0 704 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 USP28Q96RU2 1077 aa16.42■□□□□ 0.22
COMMD4-205ENST00000562310 PIGSQ96S52 555 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms