RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 KLRC3Q07444 240 aa18.6■□□□□ 0.57
VPS39-203ENST00000561797 MAP2K5Q13163 448 aa18.6■□□□□ 0.57
VPS39-203ENST00000561797 CWC27Q6UX04 472 aaKnown RBP18.6■□□□□ 0.57
VPS39-203ENST00000561797 MB21D1Q8N884 522 aa18.6■□□□□ 0.57
VPS39-203ENST00000561797 U2AF1L4Q8WU68 220 aaKnown RBP18.6■□□□□ 0.57
VPS39-203ENST00000561797 USP6NLQ92738 828 aa18.6■□□□□ 0.57
VPS39-203ENST00000561797 DEFB118Q96PH6 123 aa18.6■□□□□ 0.57
VPS39-203ENST00000561797 SPATC1LQ9H0A9 340 aa18.6■□□□□ 0.57
VPS39-203ENST00000561797 DIAPH3Q9NSV4 1193 aa18.6■□□□□ 0.57
VPS39-203ENST00000561797 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.6■□□□□ 0.57
VPS39-203ENST00000561797 TACC3Q9Y6A5 838 aa18.6■□□□□ 0.57
VPS39-203ENST00000561797 SLC15A5A6NIM6 579 aa18.59■□□□□ 0.57
VPS39-203ENST00000561797 TSPY2A6NKD2 308 aa18.59■□□□□ 0.57
VPS39-203ENST00000561797 SGPL1O95470 568 aa18.59■□□□□ 0.57
VPS39-203ENST00000561797 TTLL1O95922 423 aa18.59■□□□□ 0.57
VPS39-203ENST00000561797 NDUFB10O96000 172 aa18.59■□□□□ 0.57
VPS39-203ENST00000561797 XRCC5P13010 732 aaKnown RBP18.59■□□□□ 0.57
VPS39-203ENST00000561797 ZKSCAN1P17029 563 aaPredicted RBP18.59■□□□□ 0.57
VPS39-203ENST00000561797 CCL14Q16627 93 aa18.59■□□□□ 0.57
VPS39-203ENST00000561797 LRRC47Q8N1G4 583 aaKnown RBP18.59■□□□□ 0.57
VPS39-203ENST00000561797 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.59■□□□□ 0.57
VPS39-203ENST00000561797 TOMM22Q9NS69 142 aa18.59■□□□□ 0.57
VPS39-203ENST00000561797 ANAPC4Q9UJX5 808 aa18.59■□□□□ 0.57
VPS39-203ENST00000561797 FRMPD3Q5JV73 1810 aa18.58■□□□□ 0.57
VPS39-203ENST00000561797 ZNF236Q9UL36 1845 aa18.58■□□□□ 0.57
VPS39-203ENST00000561797 PLIN4Q96Q06 1357 aa18.58■□□□□ 0.57
VPS39-203ENST00000561797 RANBP6O60518 1105 aaKnown RBP18.58■□□□□ 0.56
VPS39-203ENST00000561797 TFRCP02786 760 aaKnown RBP18.58■□□□□ 0.56
VPS39-203ENST00000561797 ERCC3P19447 782 aa18.58■□□□□ 0.56
VPS39-203ENST00000561797 MFAP1P55081 439 aaKnown RBP18.58■□□□□ 0.56
VPS39-203ENST00000561797 HAND2P61296 217 aa18.58■□□□□ 0.56
VPS39-203ENST00000561797 TMEM132BQ14DG7 1078 aa18.58■□□□□ 0.56
VPS39-203ENST00000561797 NCAPG2Q86XI2 1143 aa18.58■□□□□ 0.56
VPS39-203ENST00000561797 MKL1Q969V6 931 aa18.58■□□□□ 0.56
VPS39-203ENST00000561797 CHMP4CQ96CF2 233 aa18.58■□□□□ 0.56
VPS39-203ENST00000561797 APBA2Q99767 749 aa18.58■□□□□ 0.56
VPS39-203ENST00000561797 HMX1Q9NP08 348 aaPredicted RBP18.58■□□□□ 0.56
VPS39-203ENST00000561797 PPP1R9AQ9ULJ8 1098 aa18.58■□□□□ 0.56
VPS39-203ENST00000561797 RPTORQ8N122 1335 aa18.57■□□□□ 0.56
VPS39-203ENST00000561797 RRP12Q5JTH9 1297 aaKnown RBP18.57■□□□□ 0.56
VPS39-203ENST00000561797 TRMT44Q8IYL2 757 aaKnown RBP18.57■□□□□ 0.56
VPS39-203ENST00000561797 SHCBP1Q8NEM2 672 aa18.57■□□□□ 0.56
VPS39-203ENST00000561797 PAK6Q9NQU5 681 aaPredicted RBP18.57■□□□□ 0.56
VPS39-203ENST00000561797 ADAMTS5Q9UNA0 930 aa18.57■□□□□ 0.56
VPS39-203ENST00000561797 HIP1O00291 1037 aa18.56■□□□□ 0.56
VPS39-203ENST00000561797 VWA5AO00534 786 aa18.56■□□□□ 0.56
VPS39-203ENST00000561797 NMT2O60551 498 aa18.56■□□□□ 0.56
VPS39-203ENST00000561797 PRKAR2AP13861 404 aaKnown RBP18.56■□□□□ 0.56
VPS39-203ENST00000561797 GRB14Q14449 540 aa18.56■□□□□ 0.56
VPS39-203ENST00000561797 TTC22Q5TAA0 569 aa18.56■□□□□ 0.56
VPS39-203ENST00000561797 NPLOC4Q8TAT6 608 aa18.56■□□□□ 0.56
VPS39-203ENST00000561797 SLF1Q9BQI6 1058 aa18.56■□□□□ 0.56
VPS39-203ENST00000561797 ISY1Q9ULR0 285 aaKnown RBP18.56■□□□□ 0.56
VPS39-203ENST00000561797 STRNO43815 780 aa18.55■□□□□ 0.56
VPS39-203ENST00000561797 ORC4O43929 436 aa18.55■□□□□ 0.56
VPS39-203ENST00000561797 CACNB2Q08289 660 aaPredicted RBP18.55■□□□□ 0.56
VPS39-203ENST00000561797 SLFN13Q68D06 897 aa18.55■□□□□ 0.56
VPS39-203ENST00000561797 DPP9Q86TI2 863 aa18.55■□□□□ 0.56
VPS39-203ENST00000561797 MROH8Q9H579 483 aa18.55■□□□□ 0.56
VPS39-203ENST00000561797 IL17RBQ9NRM6 502 aa18.55■□□□□ 0.56
VPS39-203ENST00000561797 FLRT1Q9NZU1 646 aa18.55■□□□□ 0.56
VPS39-203ENST00000561797 STX8Q9UNK0 236 aa18.55■□□□□ 0.56
VPS39-203ENST00000561797 ZMYM6O95789 1325 aa18.54■□□□□ 0.56
VPS39-203ENST00000561797 FARP2O94887 1054 aaPredicted RBP18.54■□□□□ 0.56
VPS39-203ENST00000561797 SLC25A27O95847 323 aa18.54■□□□□ 0.56
VPS39-203ENST00000561797 GSPT1P15170 499 aaKnown RBP18.54■□□□□ 0.56
VPS39-203ENST00000561797 ADORA2AP29274 412 aa18.54■□□□□ 0.56
VPS39-203ENST00000561797 STAT3P40763 770 aa18.54■□□□□ 0.56
VPS39-203ENST00000561797 PRPF38BQ5VTL8 546 aaKnown RBP18.54■□□□□ 0.56
VPS39-203ENST00000561797 GMCL1P1Q8NEA9 526 aa18.54■□□□□ 0.56
VPS39-203ENST00000561797 MTMR7Q9Y216 660 aa18.54■□□□□ 0.56
VPS39-203ENST00000561797 ALPK3Q96L96 1907 aa18.54■□□□□ 0.56
VPS39-203ENST00000561797 FGRP09769 529 aa18.53■□□□□ 0.56
VPS39-203ENST00000561797 BMP3P12645 472 aa18.53■□□□□ 0.56
VPS39-203ENST00000561797 CCND3P30281 292 aaPredicted RBP18.53■□□□□ 0.56
VPS39-203ENST00000561797 SLC4A3P48751 1232 aa18.53■□□□□ 0.56
VPS39-203ENST00000561797 PPP4R3BQ5MIZ7 849 aa18.53■□□□□ 0.56
VPS39-203ENST00000561797 MAP3K21Q5TCX8 1036 aa18.53■□□□□ 0.56
VPS39-203ENST00000561797 PRPF38AQ8NAV1 312 aaKnown RBP18.53■□□□□ 0.56
VPS39-203ENST00000561797 REPS2Q8NFH8 660 aa18.53■□□□□ 0.56
VPS39-203ENST00000561797 KIFC2Q96AC6 838 aa18.53■□□□□ 0.56
VPS39-203ENST00000561797 CRISPLD2Q9H0B8 497 aa18.53■□□□□ 0.56
VPS39-203ENST00000561797 SYNPO2Q9UMS6 1093 aa18.53■□□□□ 0.56
VPS39-203ENST00000561797 CTDP1Q9Y5B0 961 aaPredicted RBP18.53■□□□□ 0.56
VPS39-203ENST00000561797 COBLO75128 1261 aa18.52■□□□□ 0.56
VPS39-203ENST00000561797 HOXC6P09630 235 aa18.52■□□□□ 0.56
VPS39-203ENST00000561797 FCER1AP12319 257 aa18.52■□□□□ 0.56
VPS39-203ENST00000561797 MCCP23508 829 aa18.52■□□□□ 0.56
VPS39-203ENST00000561797 AKNAD1Q5T1N1 836 aa18.52■□□□□ 0.56
VPS39-203ENST00000561797 MFSD14CQ5VZR4 134 aa18.52■□□□□ 0.56
VPS39-203ENST00000561797 MFSD6Q6ZSS7 791 aa18.52■□□□□ 0.56
VPS39-203ENST00000561797 RIOX2Q8IUF8 465 aa18.52■□□□□ 0.56
VPS39-203ENST00000561797 CPXCR1Q8N123 301 aa18.52■□□□□ 0.56
VPS39-203ENST00000561797 NBPF3Q9H094 633 aa18.52■□□□□ 0.56
VPS39-203ENST00000561797 FEM1BQ9UK73 627 aa18.52■□□□□ 0.56
VPS39-203ENST00000561797 ZNF214Q9UL59 606 aaPredicted RBP18.52■□□□□ 0.56
VPS39-203ENST00000561797 SMCHD1A6NHR9 2005 aa18.52■□□□□ 0.55
VPS39-203ENST00000561797 TMEM232C9JQI7 657 aa18.51■□□□□ 0.55
VPS39-203ENST00000561797 ZNF213O14771 459 aa18.51■□□□□ 0.55
VPS39-203ENST00000561797 ZBED4O75132 1171 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms