RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 VCAM1P19320 739 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 ERCC3P19447 782 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 ITGB8P26012 769 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 USP5P45974 858 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 EPHB4P54760 987 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 MAP3K12Q12852 859 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 TTC39AQ5SRH9 613 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 NCAPG2Q86XI2 1143 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 ABRAQ8N0Z2 381 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 MB21D1Q8N884 522 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 USP38Q8NB14 1042 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 SLC44A5Q8NCS7 719 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 ACER1Q8TDN7 264 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 ADAMTS19Q8TE59 1207 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 KHSRPQ92945 711 aaKnown RBP eCLIP6.33□□□□□ -1.49e-6■■■□□ 17.9
SPG11-208ENST00000558155 UHRF1Q96T88 793 aaPredicted RBP6.33□□□□□ -1.4
SPG11-208ENST00000558155 TSEN34Q9BSV6 310 aaKnown RBP6.33□□□□□ -1.4
SPG11-208ENST00000558155 C1QTNF1Q9BXJ1 281 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 SPATC1LQ9H0A9 340 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 ZSWIM6Q9HCJ5 1215 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 XPNPEP3Q9NQH7 507 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 SNRKQ9NRH2 765 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 SMC4Q9NTJ3 1288 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 THEGQ9P2T0 379 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 RAPGEFL1Q9UHV5 662 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 SERPINB13Q9UIV8 391 aa6.33□□□□□ -1.4
SPG11-208ENST00000558155 NOB1Q9ULX3 412 aaKnown RBP6.33□□□□□ -1.4
SPG11-208ENST00000558155 CDK5RAP2Q96SN8 1893 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 LAMA3Q16787 3333 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 SLC25A27O95847 323 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 TIMP1P01033 207 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 FCER1AP12319 257 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 CYP7A1P22680 504 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 IGFBP4P22692 258 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 SLFN5Q08AF3 891 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 PPIGQ13427 754 aaKnown RBP eCLIP6.32□□□□□ -1.4
SPG11-208ENST00000558155 MTX1Q13505 466 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 PLS1Q14651 629 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 ARSIQ5FYB1 569 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 FAM47AQ5JRC9 791 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 ANKRD33Q7Z3H0 272 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 NUP133Q8WUM0 1156 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 MEIS3Q99687 375 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 EHD4Q9H223 541 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 MSRAQ9UJ68 235 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 DIS3Q9Y2L1 958 aaKnown RBP6.32□□□□□ -1.4
SPG11-208ENST00000558155 ARIH1Q9Y4X5 557 aaPredicted RBP6.32□□□□□ -1.4
SPG11-208ENST00000558155 MYH1P12882 1939 aa6.32□□□□□ -1.4
SPG11-208ENST00000558155 A0A0C4DFX4 3053 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 ZNF521Q96K83 1311 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 A0A1W2PQ45 241 aaPredicted RBP6.31□□□□□ -1.4
SPG11-208ENST00000558155 A0A1W2PQY0 241 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 PGK1P00558 417 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 CYP2E1P05181 493 aaPredicted RBP6.31□□□□□ -1.4
SPG11-208ENST00000558155 POLR3DP05423 398 aaPredicted RBP6.31□□□□□ -1.4
SPG11-208ENST00000558155 DYNLL1P63167 89 aaKnown RBP6.31□□□□□ -1.4
SPG11-208ENST00000558155 FAAP100Q0VG06 881 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 RAB30Q15771 203 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 CCDC85BQ15834 202 aaPredicted RBP6.31□□□□□ -1.4
SPG11-208ENST00000558155 AAK1Q2M2I8 961 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 MFSD5Q6N075 450 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 TMED8Q6PL24 325 aaPredicted RBP6.31□□□□□ -1.4
SPG11-208ENST00000558155 ADGRA1Q86SQ6 560 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 TMEM199Q8N511 208 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 VTI1AQ96AJ9 217 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 MAML3Q96JK9 1138 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 ZNF512BQ96KM6 892 aaPredicted RBP6.31□□□□□ -1.4
SPG11-208ENST00000558155 MMP19Q99542 508 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.31□□□□□ -1.4
SPG11-208ENST00000558155 TINF2Q9BSI4 451 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 TANGO6Q9C0B7 1094 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 MTIF3Q9H2K0 278 aaKnown RBP6.31□□□□□ -1.4
SPG11-208ENST00000558155 PRDM12Q9H4Q4 367 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 GPR108Q9NPR9 543 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 STARD7Q9NQZ5 370 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.31□□□□□ -1.4
SPG11-208ENST00000558155 SIPA1L1O43166 1804 aa6.31□□□□□ -1.4
SPG11-208ENST00000558155 PLXNA1Q9UIW2 1896 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 ELP1O95163 1332 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 MROH7Q68CQ1 1323 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 TCF20Q9UGU0 1960 aaKnown RBP6.3□□□□□ -1.4
SPG11-208ENST00000558155 TTC28Q96AY4 2481 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 MOXD2PA6NHM9 499 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 GRXCR1A8MXD5 290 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 MPHOSPH10O00566 681 aaKnown RBP6.3□□□□□ -1.4
SPG11-208ENST00000558155 IDH1O75874 414 aaKnown RBP6.3□□□□□ -1.4
SPG11-208ENST00000558155 FLOT1O75955 427 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 GNAI2P04899 355 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 CT47B1P0C2W7 299 aaPredicted RBP6.3□□□□□ -1.4
SPG11-208ENST00000558155 AKR1A1P14550 325 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 PBX2P40425 430 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 ZAP70P43403 619 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 PLCD1P51178 756 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 ACLYP53396 1101 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 OS9Q13438 667 aaPredicted RBP6.3□□□□□ -1.4
SPG11-208ENST00000558155 KCTD2Q14681 263 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 SEPT2Q15019 361 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 KCNA10Q16322 511 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 TMEM240Q5SV17 173 aa6.3□□□□□ -1.4
SPG11-208ENST00000558155 PSRC1Q6PGN9 363 aaPredicted RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms