RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 GMCL1Q96IK5 515 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 ZSCAN10Q96SZ4 725 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-228ENST00000557302 TMEM47Q9BQJ4 181 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 UBAC1Q9BSL1 405 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 TXNRD2Q9NNW7 524 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 RBPJLQ9UBG7 517 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 MYH4Q9Y623 1939 aa15.98■□□□□ 0.15
SHMT2-228ENST00000557302 FMNL1O95466 1100 aaPredicted RBP15.98■□□□□ 0.15
SHMT2-228ENST00000557302 GNRH1P01148 92 aa15.98■□□□□ 0.15
SHMT2-228ENST00000557302 DSG3P32926 999 aa15.98■□□□□ 0.15
SHMT2-228ENST00000557302 ERVK-9P63128 1117 aa15.98■□□□□ 0.15
SHMT2-228ENST00000557302 ERVK-24P63145 666 aa15.98■□□□□ 0.15
SHMT2-228ENST00000557302 CAP1Q01518 475 aa15.98■□□□□ 0.15
SHMT2-228ENST00000557302 PKN2Q16513 984 aaKnown RBP15.98■□□□□ 0.15
SHMT2-228ENST00000557302 RCSD1Q6JBY9 416 aa15.98■□□□□ 0.15
SHMT2-228ENST00000557302 STOX1Q6ZVD7 989 aa15.98■□□□□ 0.15
SHMT2-228ENST00000557302 TRIM47Q96LD4 638 aa15.98■□□□□ 0.15
SHMT2-228ENST00000557302 MCOLN1Q9GZU1 580 aa15.98■□□□□ 0.15
SHMT2-228ENST00000557302 ISY1Q9ULR0 285 aaKnown RBP15.98■□□□□ 0.15
SHMT2-228ENST00000557302 TNKSO95271 1327 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 PEX10O60683 326 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 BMP3P12645 472 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 MCCP23508 829 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 CTGFP29279 349 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 SLC1A4P43007 532 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 POTEEQ6S8J3 1075 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 CYB5R4Q7L1T6 521 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 MB21D1Q8N884 522 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 ATG4CQ96DT6 458 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 SLF1Q9BQI6 1058 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 FBXO28Q9NVF7 368 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 PPP1R9AQ9ULJ8 1098 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 MTMR7Q9Y216 660 aa15.97■□□□□ 0.15
SHMT2-228ENST00000557302 TNPO2O14787 897 aaKnown RBP15.96■□□□□ 0.15
SHMT2-228ENST00000557302 CNMDO75829 334 aa15.96■□□□□ 0.15
SHMT2-228ENST00000557302 HOXD10P28358 340 aa15.96■□□□□ 0.15
SHMT2-228ENST00000557302 CCNA1P78396 465 aa15.96■□□□□ 0.15
SHMT2-228ENST00000557302 CCAR1Q8IX12 1150 aaKnown RBP15.96■□□□□ 0.15
SHMT2-228ENST00000557302 ENAHQ8N8S7 591 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-228ENST00000557302 DCAF4Q8WV16 495 aa15.96■□□□□ 0.15
SHMT2-228ENST00000557302 ANKS1AQ92625 1134 aa15.96■□□□□ 0.15
SHMT2-228ENST00000557302 CHMP4CQ96CF2 233 aa15.96■□□□□ 0.15
SHMT2-228ENST00000557302 ABHD8Q96I13 439 aa15.96■□□□□ 0.15
SHMT2-228ENST00000557302 KAT14Q9H8E8 782 aa15.96■□□□□ 0.15
SHMT2-228ENST00000557302 BTBD7Q9P203 1132 aa15.96■□□□□ 0.15
SHMT2-228ENST00000557302 FEM1BQ9UK73 627 aa15.96■□□□□ 0.15
SHMT2-228ENST00000557302 TMEM232C9JQI7 657 aa15.95■□□□□ 0.14
SHMT2-228ENST00000557302 ZKSCAN1P17029 563 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-228ENST00000557302 SART3Q15020 963 aaKnown RBP15.95■□□□□ 0.14
SHMT2-228ENST00000557302 CCDC96Q2M329 555 aa15.95■□□□□ 0.14
SHMT2-228ENST00000557302 Q3C1V9 767 aa15.95■□□□□ 0.14
SHMT2-228ENST00000557302 IFIT1BQ5T764 474 aaKnown RBP15.95■□□□□ 0.14
SHMT2-228ENST00000557302 FBXO46Q6PJ61 603 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-228ENST00000557302 MB21D2Q8IYB1 491 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-228ENST00000557302 PRPF38AQ8NAV1 312 aaKnown RBP15.95■□□□□ 0.14
SHMT2-228ENST00000557302 COA7Q96BR5 231 aa15.95■□□□□ 0.14
SHMT2-228ENST00000557302 ADAMTS5Q9UNA0 930 aa15.95■□□□□ 0.14
SHMT2-228ENST00000557302 PTPN22Q9Y2R2 807 aa15.95■□□□□ 0.14
SHMT2-228ENST00000557302 ERICH2A1L162 156 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 VWA5AO00534 786 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 IFIT3O14879 490 aaKnown RBP15.94■□□□□ 0.14
SHMT2-228ENST00000557302 MAPK4P31152 587 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 STAT2P52630 851 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 PRMT2P55345 433 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 IKQ13123 557 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-228ENST00000557302 SEC23AQ15436 765 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 KCTD1Q719H9 257 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 RASGRP2Q7LDG7 609 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 FAM160B2Q86V87 743 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 PNMA1Q8ND90 353 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 CHURC1Q8WUH1 139 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 KIFC2Q96AC6 838 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 CWC22Q9HCG8 908 aaKnown RBP15.94■□□□□ 0.14
SHMT2-228ENST00000557302 SRRDQ9UH36 339 aa15.94■□□□□ 0.14
SHMT2-228ENST00000557302 EPB41L2O43491 1005 aaKnown RBP15.93■□□□□ 0.14
SHMT2-228ENST00000557302 PLA2G6O60733 806 aa15.93■□□□□ 0.14
SHMT2-228ENST00000557302 PDHBP11177 359 aa15.93■□□□□ 0.14
SHMT2-228ENST00000557302 MCM5P33992 734 aa15.93■□□□□ 0.14
SHMT2-228ENST00000557302 KRT32Q14532 448 aa15.93■□□□□ 0.14
SHMT2-228ENST00000557302 PLS1Q14651 629 aa15.93■□□□□ 0.14
SHMT2-228ENST00000557302 CHST3Q7LGC8 479 aa15.93■□□□□ 0.14
SHMT2-228ENST00000557302 RASEFQ8IZ41 740 aa15.93■□□□□ 0.14
SHMT2-228ENST00000557302 SPATC1LQ9H0A9 340 aa15.93■□□□□ 0.14
SHMT2-228ENST00000557302 PORCNQ9H237 461 aa15.93■□□□□ 0.14
SHMT2-228ENST00000557302 CTDP1Q9Y5B0 961 aaPredicted RBP15.93■□□□□ 0.14
SHMT2-228ENST00000557302 RLFQ13129 1914 aa15.93■□□□□ 0.14
SHMT2-228ENST00000557302 ZSWIM8A7E2V4 1837 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 PRC1O43663 620 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 ZBED4O75132 1171 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 SNHG28P0DPA3 235 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 HSPA4P34932 840 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 ANTXR2P58335 489 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 PRKCZQ05513 592 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 TMEM132BQ14DG7 1078 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 WTAPQ15007 396 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 TSGA10IPQ3SY00 556 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 TMEM67Q5HYA8 995 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 WDR78Q5VTH9 848 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 NEK1Q96PY6 1258 aa15.92■□□□□ 0.14
SHMT2-228ENST00000557302 MTA3Q9BTC8 594 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms