RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ANKRD23Q86SG2 305 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 MICU3Q86XE3 530 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 CCDC144CPQ8IYA2 1237 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 GMCL1Q96IK5 515 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 GPCPD1Q9NPB8 672 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 USP17L15C9J2P7 530 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 USP17L13C9JLJ4 530 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 USP17L11C9JVI0 530 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 USP17L18D6R9N7 530 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 USP17L22D6RA61 530 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 USP17L17D6RBQ6 530 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 USP17L19D6RCP7 530 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 USP17L20D6RJB6 530 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 USP17L24Q0WX57 530 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 TOB2Q14106 344 aaPredicted RBP16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 DCAF4Q8WV16 495 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 BRPF3Q9ULD4 1205 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 MYH8P13535 1937 aa16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 GREB1LQ9C091 1923 aaPredicted RBP16.41■□□□□ 0.22
VIPAS39-208ENST00000556412 GOLGA8BA8MQT2 603 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 FLOT1O75955 427 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 CYP2C8P10632 490 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 OSBPP22059 807 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 TM4SF4P48230 202 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 AK2P54819 239 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 SGMS1Q86VZ5 419 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 REM2Q8IYK8 340 aaPredicted RBP16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 DNAJC5GQ8N7S2 189 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 TMEM232C9JQI7 657 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 DDAH1O94760 285 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 PARP1P09874 1014 aaKnown RBP16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 TAF1CQ15572 869 aaPredicted RBP16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 APOA5Q6Q788 366 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 SMCR8Q8TEV9 937 aaPredicted RBP16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 FBXO28Q9NVF7 368 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 PNMA3Q9UL41 463 aa16.4■□□□□ 0.22
VIPAS39-208ENST00000556412 ZBTB43O43298 467 aa16.39■□□□□ 0.21
VIPAS39-208ENST00000556412 ZNF543Q08ER8 600 aa16.39■□□□□ 0.21
VIPAS39-208ENST00000556412 TROAPQ12815 778 aa16.39■□□□□ 0.21
VIPAS39-208ENST00000556412 ANKRD1Q15327 319 aa16.39■□□□□ 0.21
VIPAS39-208ENST00000556412 CATSPERGQ6ZRH7 1159 aa16.39■□□□□ 0.21
VIPAS39-208ENST00000556412 CTCFLQ8NI51 663 aaPredicted RBP16.39■□□□□ 0.21
VIPAS39-208ENST00000556412 KIFC2Q96AC6 838 aa16.39■□□□□ 0.21
VIPAS39-208ENST00000556412 ASCC2Q9H1I8 757 aaPredicted RBP16.39■□□□□ 0.21
VIPAS39-208ENST00000556412 GOLGA8AA7E2F4 631 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 ST18O60284 1047 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 CALM1P0DP23 149 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 CALM2P0DP24 149 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 CALM3P0DP25 149 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 SLC16A2P36021 539 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 STK3Q13188 491 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 TTBK2Q6IQ55 1244 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 PARK7Q99497 189 aaKnown RBP16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 AGXT2Q9BYV1 514 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 DHX16O60231 1041 aaKnown RBP16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 SNHG28P0DPA3 235 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 HOXA7P31268 230 aaPredicted RBP16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 STAT2P52630 851 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 GRM4Q14833 912 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 ASPRV1Q53RT3 343 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 GPATCH4Q5T3I0 446 aaKnown RBP16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 FBXL16Q8N461 479 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 P2RX7Q99572 595 aaKnown RBP16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 SLF1Q9BQI6 1058 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 BEGAINQ9BUH8 593 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 UBA5Q9GZZ9 404 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 CPVLQ9H3G5 476 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 FEM1BQ9UK73 627 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 SLC45A1Q9Y2W3 748 aa16.38■□□□□ 0.21
VIPAS39-208ENST00000556412 TRPA1O75762 1119 aa16.37■□□□□ 0.21
VIPAS39-208ENST00000556412 ALDH1A1P00352 501 aa16.37■□□□□ 0.21
VIPAS39-208ENST00000556412 KIF5BP33176 963 aa16.37■□□□□ 0.21
VIPAS39-208ENST00000556412 METAP2P50579 478 aaKnown RBP eCLIP16.37■□□□□ 0.21
VIPAS39-208ENST00000556412 COG2Q14746 738 aa16.37■□□□□ 0.21
VIPAS39-208ENST00000556412 STAG2Q8N3U4 1231 aa16.37■□□□□ 0.21
VIPAS39-208ENST00000556412 PHIPQ8WWQ0 1821 aa16.37■□□□□ 0.21
VIPAS39-208ENST00000556412 CCT2P78371 535 aaKnown RBP16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 MAP2K1Q02750 393 aaPredicted RBP16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 RTN1Q16799 776 aa16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 FANCBQ8NB91 859 aa16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 CHURC1Q8WUH1 139 aa16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 ATG4CQ96DT6 458 aa16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 ALDH8A1Q9H2A2 487 aaPredicted RBP16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 ZFYVE28Q9HCC9 887 aa16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 RNF186Q9NXI6 227 aa16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 MAD2L2Q9UI95 211 aa16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 TPCN1Q9ULQ1 816 aa16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 CTDP1Q9Y5B0 961 aaPredicted RBP16.36■□□□□ 0.21
VIPAS39-208ENST00000556412 KLRF2D3W0D1 207 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 TBC1D8O95759 1140 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 PDIA3P30101 505 aaKnown RBP16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 HERVK_113P62684 666 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 CRHR2Q13324 411 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 FAM160B2Q86V87 743 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 PAGR1Q9BTK6 254 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 VAT1LQ9HCJ6 419 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 ZCCHC17Q9NP64 241 aaKnown RBP16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 HOXC10Q9NYD6 342 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 PPP1R9AQ9ULJ8 1098 aa16.35■□□□□ 0.21
VIPAS39-208ENST00000556412 SPDYE16A6NNV3 312 aaPredicted RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms