RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 KDM2BQ8NHM5 1336 aa8.54□□□□□ -1.04
LINC00643-204ENST00000555934 TLDC2A0PJX2 215 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 ANKRD34BA5PLL1 514 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 GNAT3A8MTJ3 354 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 MEIS1O00470 390 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 SSRP1Q08945 709 aaKnown RBP8.53□□□□□ -1.04
LINC00643-204ENST00000555934 LRP10Q7Z4F1 713 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 TMC3Q7Z5M5 1100 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 APBA2Q99767 749 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 KLHL25Q9H0H3 589 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 GFOD1Q9NXC2 390 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 LRP2BPQ9P2M1 347 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 ZMYM5Q9UJ78 669 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 MINPP1Q9UNW1 487 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 PCDHB12Q9Y5F1 795 aa8.53□□□□□ -1.04
LINC00643-204ENST00000555934 CD247P20963 164 aa8.52□□□□□ -1.05
LINC00643-204ENST00000555934 CYP27A1Q02318 531 aa8.52□□□□□ -1.05
LINC00643-204ENST00000555934 TCEAL1Q15170 157 aa8.52□□□□□ -1.05
LINC00643-204ENST00000555934 NOL9Q5SY16 702 aaKnown RBP8.52□□□□□ -1.05
LINC00643-204ENST00000555934 CDKAL1Q5VV42 579 aa8.52□□□□□ -1.05
LINC00643-204ENST00000555934 DTWD2Q8NBA8 298 aa8.52□□□□□ -1.05
LINC00643-204ENST00000555934 ST13P5Q8NFI4 369 aaPredicted RBP8.52□□□□□ -1.05
LINC00643-204ENST00000555934 GBP3Q9H0R5 595 aa8.52□□□□□ -1.05
LINC00643-204ENST00000555934 GP6Q9HCN6 339 aa8.52□□□□□ -1.05
LINC00643-204ENST00000555934 TBX22Q9Y458 520 aa8.52□□□□□ -1.05
LINC00643-204ENST00000555934 FAM155AB1AL88 458 aaPredicted RBP8.51□□□□□ -1.05
LINC00643-204ENST00000555934 TNK2Q07912 1038 aa8.51□□□□□ -1.05
LINC00643-204ENST00000555934 PPP2R5DQ14738 602 aa8.51□□□□□ -1.05
LINC00643-204ENST00000555934 ZDHHC13Q8IUH4 622 aa8.51□□□□□ -1.05
LINC00643-204ENST00000555934 MFSD4AQ8N468 514 aa8.51□□□□□ -1.05
LINC00643-204ENST00000555934 LRRN4CLQ8ND94 238 aa8.51□□□□□ -1.05
LINC00643-204ENST00000555934 SH3TC2Q8TF17 1288 aa8.51□□□□□ -1.05
LINC00643-204ENST00000555934 RNPC3Q96LT9 517 aaKnown RBP8.51□□□□□ -1.05
LINC00643-204ENST00000555934 KCNH3Q9ULD8 1083 aa8.51□□□□□ -1.05
LINC00643-204ENST00000555934 SHISA3A0PJX4 238 aa8.5□□□□□ -1.05
LINC00643-204ENST00000555934 NAT2P11245 290 aa8.5□□□□□ -1.05
LINC00643-204ENST00000555934 ITGA4P13612 1032 aa8.5□□□□□ -1.05
LINC00643-204ENST00000555934 KIR3DL1P43629 444 aa8.5□□□□□ -1.05
LINC00643-204ENST00000555934 ZNF445P59923 1031 aa8.5□□□□□ -1.05
LINC00643-204ENST00000555934 NLGN1Q8N2Q7 840 aa8.5□□□□□ -1.05
LINC00643-204ENST00000555934 NOL6Q9H6R4 1146 aaKnown RBP8.5□□□□□ -1.05
LINC00643-204ENST00000555934 CWC22Q9HCG8 908 aaKnown RBP8.5□□□□□ -1.05
LINC00643-204ENST00000555934 CAPN6Q9Y6Q1 641 aa8.5□□□□□ -1.05
LINC00643-204ENST00000555934 IGF2BP3O00425 579 aaKnown RBP eCLIP8.49□□□□□ -1.05
LINC00643-204ENST00000555934 PPM1BO75688 479 aa8.49□□□□□ -1.05
LINC00643-204ENST00000555934 ANKRD39Q53RE8 183 aa8.49□□□□□ -1.05
LINC00643-204ENST00000555934 SDE2Q6IQ49 451 aa8.49□□□□□ -1.05
LINC00643-204ENST00000555934 FAM177A1Q8N128 213 aaPredicted RBP8.49□□□□□ -1.05
LINC00643-204ENST00000555934 METTL22Q9BUU2 404 aaPredicted RBP8.49□□□□□ -1.05
LINC00643-204ENST00000555934 DSCC1Q9BVC3 393 aa8.49□□□□□ -1.05
LINC00643-204ENST00000555934 ASCC2Q9H1I8 757 aaPredicted RBP8.49□□□□□ -1.05
LINC00643-204ENST00000555934 WHRNQ9P202 907 aa8.49□□□□□ -1.05
LINC00643-204ENST00000555934 WASH4PA8MWX3 477 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 AGRPO00253 132 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 CYP26A1O43174 497 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 TBX1O43435 398 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 PRAMEF1O95521 474 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 ITGAVP06756 1048 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 ZNF865P0CJ78 1059 aaPredicted RBP8.48□□□□□ -1.05
LINC00643-204ENST00000555934 ZNF143P52747 638 aaPredicted RBP8.48□□□□□ -1.05
LINC00643-204ENST00000555934 OXCT1P55809 520 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 NMIQ13287 307 aaPredicted RBP8.48□□□□□ -1.05
LINC00643-204ENST00000555934 CLEC16AQ2KHT3 1053 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 PLD6Q8N2A8 252 aaKnown RBP8.48□□□□□ -1.05
LINC00643-204ENST00000555934 FIBCD1Q8N539 461 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 COX4I2Q96KJ9 171 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 ZDHHC15Q96MV8 337 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 SPATA9Q9BWV2 254 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 AKT3Q9Y243 479 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 LEMD3Q9Y2U8 911 aa8.48□□□□□ -1.05
LINC00643-204ENST00000555934 A0A1W2PQU0 124 aa8.47□□□□□ -1.05
LINC00643-204ENST00000555934 FAM153BP0C7A2 387 aa8.47□□□□□ -1.05
LINC00643-204ENST00000555934 CPSF6Q16630 551 aaKnown RBP eCLIP8.47□□□□□ -1.05
LINC00643-204ENST00000555934 ZMYM1Q5SVZ6 1142 aa8.47□□□□□ -1.05
LINC00643-204ENST00000555934 ZNF227Q86WZ6 799 aa8.47□□□□□ -1.05
LINC00643-204ENST00000555934 ZNF513Q8N8E2 541 aaPredicted RBP8.47□□□□□ -1.05
LINC00643-204ENST00000555934 EPN3Q9H201 632 aa8.47□□□□□ -1.05
LINC00643-204ENST00000555934 CHST7Q9NS84 486 aa8.47□□□□□ -1.05
LINC00643-204ENST00000555934 ESYT3A0FGR9 886 aa8.46□□□□□ -1.06
LINC00643-204ENST00000555934 PRR19A6NJB7 356 aa8.46□□□□□ -1.06
LINC00643-204ENST00000555934 H3BS24 57 aa8.46□□□□□ -1.06
LINC00643-204ENST00000555934 TGFB1P01137 390 aa8.46□□□□□ -1.06
LINC00643-204ENST00000555934 CEACAM5P06731 702 aa8.46□□□□□ -1.06
LINC00643-204ENST00000555934 NKPD1Q17RQ9 610 aa8.46□□□□□ -1.06
LINC00643-204ENST00000555934 C22orf34Q6ZV56 151 aa8.46□□□□□ -1.06
LINC00643-204ENST00000555934 BVESQ8NE79 360 aa8.46□□□□□ -1.06
LINC00643-204ENST00000555934 HSPA12BQ96MM6 686 aa8.46□□□□□ -1.06
LINC00643-204ENST00000555934 ZSWIM5Q9P217 1185 aa8.46□□□□□ -1.06
LINC00643-204ENST00000555934 CGGBP1Q9UFW8 167 aaPredicted RBP8.46□□□□□ -1.06
LINC00643-204ENST00000555934 PLAGL2Q9UPG8 496 aa8.46□□□□□ -1.06
LINC00643-204ENST00000555934 IQCA1LA6NCM1 817 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 H0Y8X5 98 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 NOP56O00567 594 aaKnown RBP8.45□□□□□ -1.06
LINC00643-204ENST00000555934 SIGLEC6O43699 453 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 VAMP4O75379 141 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 KCNH1O95259 989 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 PPP2R2AP63151 447 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 SQSTM1Q13501 440 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 C2orf27AQ580R0 203 aa8.45□□□□□ -1.06
LINC00643-204ENST00000555934 KRTAP1-3Q8IUG1 177 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms