RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 TMEM67Q5HYA8 995 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 SLFN13Q68D06 897 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 ENAHQ8N8S7 591 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-218ENST00000555213 IL27Q8NEV9 243 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 TMEM87BQ96K49 555 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 TMEM47Q9BQJ4 181 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 CFHR5Q9BXR6 569 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 WDR19Q8NEZ3 1342 aa12.77□□□□□ -0.37
SHMT2-218ENST00000555213 K7ELQ4 463 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-218ENST00000555213 DDIT3P35638 169 aa12.76□□□□□ -0.37
SHMT2-218ENST00000555213 AK2P54819 239 aa12.76□□□□□ -0.37
SHMT2-218ENST00000555213 TOB2Q14106 344 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-218ENST00000555213 WTAPQ15007 396 aa12.76□□□□□ -0.37
SHMT2-218ENST00000555213 CCDC96Q2M329 555 aa12.76□□□□□ -0.37
SHMT2-218ENST00000555213 BLOC1S2Q6QNY1 142 aa12.76□□□□□ -0.37
SHMT2-218ENST00000555213 CYB5R4Q7L1T6 521 aa12.76□□□□□ -0.37
SHMT2-218ENST00000555213 DCAF4Q8WV16 495 aa12.76□□□□□ -0.37
SHMT2-218ENST00000555213 ANKS1AQ92625 1134 aa12.76□□□□□ -0.37
SHMT2-218ENST00000555213 GMCL1Q96IK5 515 aa12.76□□□□□ -0.37
SHMT2-218ENST00000555213 ASCC2Q9H1I8 757 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-218ENST00000555213 CYP46A1Q9Y6A2 500 aa12.76□□□□□ -0.37
SHMT2-218ENST00000555213 ST18O60284 1047 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 TLR2O60603 784 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 FLOT1O75955 427 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 CYP2C8P10632 490 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 BMP3P12645 472 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 GCLCP48506 637 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-218ENST00000555213 CTCFP49711 727 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-218ENST00000555213 IKQ13123 557 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-218ENST00000555213 FAM83BQ5T0W9 1011 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 RCSD1Q6JBY9 416 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 NFXL1Q6ZNB6 911 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 DHX32Q7L7V1 743 aaKnown RBP12.75□□□□□ -0.37
SHMT2-218ENST00000555213 CHST3Q7LGC8 479 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 MYPNQ86TC9 1320 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 TMTC2Q8N394 836 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 PNMA1Q8ND90 353 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 TCEANC2Q96MN5 208 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 LARP6Q9BRS8 491 aaKnown RBP12.75□□□□□ -0.37
SHMT2-218ENST00000555213 PDRG1Q9NUG6 133 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 MTMR7Q9Y216 660 aa12.75□□□□□ -0.37
SHMT2-218ENST00000555213 CCDC69A6NI79 296 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 TBC1D8O95759 1140 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 ANTXR2P58335 489 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 HERVK_113P62684 666 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 CUL4AQ13619 759 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 COG2Q14746 738 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 SEC23AQ15436 765 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 NOM1Q5C9Z4 860 aaKnown RBP12.74□□□□□ -0.37
SHMT2-218ENST00000555213 CATSPERGQ6ZRH7 1159 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 CATIPQ7Z7H3 387 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 HSCBQ8IWL3 235 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 FBXL16Q8N461 479 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 TMX3Q96JJ7 454 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 AGXT2Q9BYV1 514 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 HOXC10Q9NYD6 342 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 MYH4Q9Y623 1939 aa12.74□□□□□ -0.37
SHMT2-218ENST00000555213 SH2B2O14492 632 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-218ENST00000555213 LARGE1O95461 756 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 MCM2P49736 904 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 STAT2P52630 851 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 ST3GAL1Q11201 340 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 KIAA1755Q5JYT7 1200 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 GPATCH4Q5T3I0 446 aaKnown RBP12.73□□□□□ -0.37
SHMT2-218ENST00000555213 SAMD1Q6SPF0 538 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-218ENST00000555213 SYNE3Q6ZMZ3 975 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 FAM160B2Q86V87 743 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 MB21D1Q8N884 522 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 SPRYD3Q8NCJ5 442 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 CHURC1Q8WUH1 139 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 NUP88Q99567 741 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-218ENST00000555213 SLF1Q9BQI6 1058 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 GPHNQ9NQX3 736 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-218ENST00000555213 TSKSQ9UJT2 592 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 FEM1BQ9UK73 627 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 TPCN1Q9ULQ1 816 aa12.73□□□□□ -0.37
SHMT2-218ENST00000555213 CTDP1Q9Y5B0 961 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-218ENST00000555213 ADGRA2Q96PE1 1338 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 SPDYE16A6NNV3 312 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-218ENST00000555213 GPR25O00155 361 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 FOXN1O15353 648 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 DDAH1O94760 285 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 PARP1P09874 1014 aaKnown RBP12.72□□□□□ -0.37
SHMT2-218ENST00000555213 CALM1P0DP23 149 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 CALM2P0DP24 149 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 CALM3P0DP25 149 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 PDHBP11177 359 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 LIFRP42702 1097 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 KIF22Q14807 665 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 FAM110CQ1W6H9 321 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 ASPRV1Q53RT3 343 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 Q6ZUG5 572 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 IGDCC4Q8TDY8 1250 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 P2RX7Q99572 595 aaKnown RBP12.72□□□□□ -0.37
SHMT2-218ENST00000555213 LY9Q9HBG7 655 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 CPA4Q9UI42 421 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 PPP1R9AQ9ULJ8 1098 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 LIMCH1Q9UPQ0 1083 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 SLC12A7Q9Y666 1083 aa12.72□□□□□ -0.37
SHMT2-218ENST00000555213 FRMPD2Q68DX3 1309 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms