RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 ATP11BQ9Y2G3 1177 aa10.64□□□□□ -0.71
TDP1-208ENST00000553989 FRMPD3Q5JV73 1810 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 STRNO43815 780 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 MBD4O95243 580 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 CYBAP13498 195 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 RTP1P59025 263 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 CLEC10AQ8IUN9 316 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 MB21D1Q8N884 522 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 ARRDC4Q8NCT1 418 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 TRPV1Q8NER1 839 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.63□□□□□ -0.71
TDP1-208ENST00000553989 BOLA2Q9H3K6 86 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 PAG1Q9NWQ8 432 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 RCAN3Q9UKA8 241 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 STXBP5LQ9Y2K9 1186 aa10.63□□□□□ -0.71
TDP1-208ENST00000553989 PRKAB2O43741 272 aa10.62□□□□□ -0.71
TDP1-208ENST00000553989 AKR1B1P15121 316 aa10.62□□□□□ -0.71
TDP1-208ENST00000553989 OLFML2BQ68BL8 750 aa10.62□□□□□ -0.71
TDP1-208ENST00000553989 SHCBP1Q8NEM2 672 aa10.62□□□□□ -0.71
TDP1-208ENST00000553989 ATG4CQ96DT6 458 aa10.62□□□□□ -0.71
TDP1-208ENST00000553989 MROH8Q9H579 483 aa10.62□□□□□ -0.71
TDP1-208ENST00000553989 MTMR10Q9NXD2 777 aa10.62□□□□□ -0.71
TDP1-208ENST00000553989 LAMA3Q16787 3333 aa10.62□□□□□ -0.71
TDP1-208ENST00000553989 TCRBV5S4A2TA0A5A2 114 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 WDR46O15213 610 aaKnown RBP10.61□□□□□ -0.71
TDP1-208ENST00000553989 SEPT4O43236 478 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 RAB11FIP3O75154 756 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 FCER1AP12319 257 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 ADD2P35612 726 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 ZNF697Q5TEC3 545 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 RPAP2Q8IXW5 612 aaPredicted RBP10.61□□□□□ -0.71
TDP1-208ENST00000553989 CCDC17Q96LX7 622 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 FAM161BQ96MY7 647 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 MMP19Q99542 508 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 VCPKMTQ9H867 229 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 ATP8A2Q9NTI2 1148 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 DDX19BQ9UMR2 479 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 COG6Q9Y2V7 657 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 ZNF236Q9UL36 1845 aa10.61□□□□□ -0.71
TDP1-208ENST00000553989 CYP2D7A0A087X1C5 515 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 COBLO75128 1261 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 SLC25A27O95847 323 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 CDK8P49336 464 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 RRP1P56182 461 aaKnown RBP10.6□□□□□ -0.71
TDP1-208ENST00000553989 TRIM60Q495X7 471 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 SLFNL1Q499Z3 407 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 KIAA1755Q5JYT7 1200 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 PRAMEF19Q5SWL8 479 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 SLC39A5Q6ZMH5 540 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 FERMT2Q96AC1 680 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 CHMP4BQ9H444 224 aaKnown RBP10.6□□□□□ -0.71
TDP1-208ENST00000553989 GOPCQ9HD26 462 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 TMX2Q9Y320 296 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 SLC4A4Q9Y6R1 1079 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 MYH8P13535 1937 aa10.6□□□□□ -0.71
TDP1-208ENST00000553989 A0A0G2JMZ2 1700 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 USP17L12C9JPN9 530 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 USP17L21D6R901 530 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 PGK2P07205 417 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 RARBP10826 455 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 EEF2P13639 858 aaKnown RBP10.59□□□□□ -0.71
TDP1-208ENST00000553989 ADCYAP1R1P41586 468 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 KCTD2Q14681 263 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 TMEM132BQ14DG7 1078 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 FAM47AQ5JRC9 791 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 ZSCAN25Q6NSZ9 544 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 ABRAQ8N0Z2 381 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 MAML3Q96JK9 1138 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 HAUS7Q99871 368 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 KANSL2Q9H9L4 492 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 XPNPEP3Q9NQH7 507 aa10.59□□□□□ -0.71
TDP1-208ENST00000553989 ATP5JP18859 108 aa10.58□□□□□ -0.72
TDP1-208ENST00000553989 SLC4A3P48751 1232 aa10.58□□□□□ -0.72
TDP1-208ENST00000553989 LRRC41Q15345 812 aa10.58□□□□□ -0.72
TDP1-208ENST00000553989 UBE3CQ15386 1083 aa10.58□□□□□ -0.72
TDP1-208ENST00000553989 FAM83BQ5T0W9 1011 aa10.58□□□□□ -0.72
TDP1-208ENST00000553989 C12orf60Q5U649 245 aa10.58□□□□□ -0.72
TDP1-208ENST00000553989 C16orf86Q6ZW13 317 aa10.58□□□□□ -0.72
TDP1-208ENST00000553989 STK11IPQ8N1F8 1099 aa10.58□□□□□ -0.72
TDP1-208ENST00000553989 BADQ92934 168 aa10.58□□□□□ -0.72
TDP1-208ENST00000553989 FBXO28Q9NVF7 368 aa10.58□□□□□ -0.72
TDP1-208ENST00000553989 ARPP21Q9UBL0 812 aaPredicted RBP10.58□□□□□ -0.72
TDP1-208ENST00000553989 CTDP1Q9Y5B0 961 aaPredicted RBP10.58□□□□□ -0.72
TDP1-208ENST00000553989 BAZ2AQ9UIF9 1905 aaKnown RBP10.57□□□□□ -0.72
TDP1-208ENST00000553989 SMIM22K7EJ46 135 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 CHGBP05060 677 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 COPB2P35606 906 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 STAT3P40763 770 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 SHHQ15465 462 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 CTR9Q6PD62 1173 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 ZNF467Q7Z7K2 595 aaPredicted RBP10.57□□□□□ -0.72
TDP1-208ENST00000553989 RNF180Q86T96 592 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 RIOX2Q8IUF8 465 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 SIAH1Q8IUQ4 282 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 SIRT2Q8IXJ6 389 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 LRRCC1Q9C099 1032 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 MKNK2Q9HBH9 465 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 PDLIM7Q9NR12 457 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 ZBTB40Q9NUA8 1239 aa10.57□□□□□ -0.72
TDP1-208ENST00000553989 PPP1R9AQ9ULJ8 1098 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms