RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 Q7L0L9 218 aa13.75□□□□□ -0.21
NEK3-204ENST00000552973 MAML3Q96JK9 1138 aa13.75□□□□□ -0.21
NEK3-204ENST00000552973 MMP19Q99542 508 aa13.75□□□□□ -0.21
NEK3-204ENST00000552973 GOPCQ9HD26 462 aa13.75□□□□□ -0.21
NEK3-204ENST00000552973 M0R2C6 588 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 VWA5AO00534 786 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 RNF113AO15541 343 aaKnown RBP13.74□□□□□ -0.21
NEK3-204ENST00000552973 SEPT4O43236 478 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 PRDM1O75626 825 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 SLC25A27O95847 323 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 APPP05067 770 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 RASA1P20936 1047 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 STAT3P40763 770 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 SLC4A3P48751 1232 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 RTP1P59025 263 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 SBK1Q52WX2 424 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 ABRAQ8N0Z2 381 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 APPBP2Q92624 585 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 GPATCH3Q96I76 525 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 PPP1R9AQ9ULJ8 1098 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 ADAMTS5Q9UNA0 930 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 ATP11BQ9Y2G3 1177 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 ALPK3Q96L96 1907 aa13.74□□□□□ -0.21
NEK3-204ENST00000552973 GPAA1O43292 621 aa13.73□□□□□ -0.21
NEK3-204ENST00000552973 TDO2P48775 406 aa13.73□□□□□ -0.21
NEK3-204ENST00000552973 LRIT3Q3SXY7 679 aa13.73□□□□□ -0.21
NEK3-204ENST00000552973 RIOX2Q8IUF8 465 aa13.73□□□□□ -0.21
NEK3-204ENST00000552973 ARRDC4Q8NCT1 418 aa13.73□□□□□ -0.21
NEK3-204ENST00000552973 FERMT2Q96AC1 680 aa13.73□□□□□ -0.21
NEK3-204ENST00000552973 SEC62Q99442 399 aaKnown RBP13.73□□□□□ -0.21
NEK3-204ENST00000552973 LBHD1Q9BQE6 289 aaPredicted RBP13.73□□□□□ -0.21
NEK3-204ENST00000552973 EPB41L4AQ9HCS5 686 aaPredicted RBP13.73□□□□□ -0.21
NEK3-204ENST00000552973 CLIP2Q9UDT6 1046 aa13.73□□□□□ -0.21
NEK3-204ENST00000552973 CEP290O15078 2479 aa13.73□□□□□ -0.21
NEK3-204ENST00000552973 KBTBD13C9JR72 458 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 F5H6K3 240 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 TAL1P17542 331 aaPredicted RBP13.72□□□□□ -0.21
NEK3-204ENST00000552973 ADCYAP1R1P41586 468 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 KLRC3Q07444 240 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 KCTD2Q14681 263 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 FAM47AQ5JRC9 791 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 SLC39A5Q6ZMH5 540 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 ZNF444Q8N0Y2 327 aaPredicted RBP13.72□□□□□ -0.21
NEK3-204ENST00000552973 DEFB123Q8N688 67 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 REPS2Q8NFH8 660 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 OTUD7AQ8TE49 926 aaPredicted RBP13.72□□□□□ -0.21
NEK3-204ENST00000552973 CHMP4CQ96CF2 233 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 PRKAG2Q9UGJ0 569 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 ZNF214Q9UL59 606 aaPredicted RBP13.72□□□□□ -0.21
NEK3-204ENST00000552973 RIPK3Q9Y572 518 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 PCDHB15Q9Y5E8 787 aa13.72□□□□□ -0.21
NEK3-204ENST00000552973 NDUFB10O96000 172 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 LRRC41Q15345 812 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 ZNF792Q3KQV3 632 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 TRIM60Q495X7 471 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 GIMAP6Q6P9H5 292 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 POTEDQ86YR6 584 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 IFNL3Q8IZI9 196 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 CPXCR1Q8N123 301 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 SLC17A8Q8NDX2 589 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 SLF1Q9BQI6 1058 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 TINF2Q9BSI4 451 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 PRDM5Q9NQX1 630 aaPredicted RBP13.71□□□□□ -0.21
NEK3-204ENST00000552973 NYAP2Q9P242 653 aa13.71□□□□□ -0.21
NEK3-204ENST00000552973 PATL2C9JE40 543 aaKnown RBP13.7□□□□□ -0.22
NEK3-204ENST00000552973 PGK1P00558 417 aa13.7□□□□□ -0.22
NEK3-204ENST00000552973 ZFYP08048 801 aaPredicted RBP13.7□□□□□ -0.22
NEK3-204ENST00000552973 SNRNP48Q6IEG0 339 aaKnown RBP13.7□□□□□ -0.22
NEK3-204ENST00000552973 LRRC47Q8N1G4 583 aaKnown RBP13.7□□□□□ -0.22
NEK3-204ENST00000552973 LENG1Q96BZ8 264 aaPredicted RBP13.7□□□□□ -0.22
NEK3-204ENST00000552973 IGKV6D-41A0A0C4DH26 115 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 ZNF865P0CJ78 1059 aaPredicted RBP13.69□□□□□ -0.22
NEK3-204ENST00000552973 RARBP10826 455 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 GNAT2P19087 354 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 SH3RF1Q7Z6J0 888 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 PI4K2BQ8TCG2 481 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 KIFC2Q96AC6 838 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 DDX11Q96FC9 970 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 CEP95Q96GE4 821 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 FSD1Q9BTV5 496 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 TEX13BQ9BXU2 312 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 RAVER2Q9HCJ3 691 aaKnown RBP13.69□□□□□ -0.22
NEK3-204ENST00000552973 XPNPEP3Q9NQH7 507 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 DIS3Q9Y2L1 958 aaKnown RBP13.69□□□□□ -0.22
NEK3-204ENST00000552973 CTDP1Q9Y5B0 961 aaPredicted RBP13.69□□□□□ -0.22
NEK3-204ENST00000552973 SZT2Q5T011 3432 aa13.69□□□□□ -0.22
NEK3-204ENST00000552973 ERC2O15083 957 aa13.68□□□□□ -0.22
NEK3-204ENST00000552973 ZBED4O75132 1171 aa13.68□□□□□ -0.22
NEK3-204ENST00000552973 GPR153Q6NV75 609 aa13.68□□□□□ -0.22
NEK3-204ENST00000552973 PRPF38AQ8NAV1 312 aaKnown RBP13.68□□□□□ -0.22
NEK3-204ENST00000552973 BADQ92934 168 aa13.68□□□□□ -0.22
NEK3-204ENST00000552973 MTMR10Q9NXD2 777 aa13.68□□□□□ -0.22
NEK3-204ENST00000552973 MTMR4Q9NYA4 1195 aa13.68□□□□□ -0.22
NEK3-204ENST00000552973 ISY1Q9ULR0 285 aaKnown RBP13.68□□□□□ -0.22
NEK3-204ENST00000552973 BAZ2AQ9UIF9 1905 aaKnown RBP13.68□□□□□ -0.22
NEK3-204ENST00000552973 RANBP2P49792 3224 aaKnown RBP13.68□□□□□ -0.22
NEK3-204ENST00000552973 TTC41PQ6P2S7 1318 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 RLFQ13129 1914 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 TSPY3P0CV98 308 aa13.67□□□□□ -0.22
NEK3-204ENST00000552973 TSPY8P0CW00 308 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms