RNA–Protein interactions for RNA: ENST00000547654.5

SCAF11-210, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-210ENST00000547654 RBM47A0AV96 593 aaKnown RBP6.6□□□□□ -1.35
SCAF11-210ENST00000547654 ZNF385BQ569K4 471 aa6.6□□□□□ -1.35
SCAF11-210ENST00000547654 ANKS4BQ8N8V4 417 aa6.6□□□□□ -1.35
SCAF11-210ENST00000547654 FBXO27Q8NI29 283 aa6.6□□□□□ -1.35
SCAF11-210ENST00000547654 C20orf173Q96LM9 149 aa6.6□□□□□ -1.35
SCAF11-210ENST00000547654 KBTBD4Q9NVX7 518 aa6.6□□□□□ -1.35
SCAF11-210ENST00000547654 VTI1BQ9UEU0 232 aa6.6□□□□□ -1.35
SCAF11-210ENST00000547654 CHMP4BP1P59074 171 aa6.59□□□□□ -1.35
SCAF11-210ENST00000547654 SNX17Q15036 470 aa6.59□□□□□ -1.35
SCAF11-210ENST00000547654 CLEC16AQ2KHT3 1053 aa6.59□□□□□ -1.35
SCAF11-210ENST00000547654 VWCEQ96DN2 955 aa6.59□□□□□ -1.35
SCAF11-210ENST00000547654 ADAMTS1Q9UHI8 967 aa6.59□□□□□ -1.35
SCAF11-210ENST00000547654 KCTD3Q9Y597 815 aa6.59□□□□□ -1.35
SCAF11-210ENST00000547654 CRKP46108 304 aa6.58□□□□□ -1.36
SCAF11-210ENST00000547654 FAM196AQ6ZSG2 479 aa6.58□□□□□ -1.36
SCAF11-210ENST00000547654 TMEM151BQ8IW70 566 aa6.58□□□□□ -1.36
SCAF11-210ENST00000547654 SGPP1Q9BX95 441 aa6.58□□□□□ -1.36
SCAF11-210ENST00000547654 ASPNQ9BXN1 380 aa6.58□□□□□ -1.36
SCAF11-210ENST00000547654 ZNF552Q9H707 407 aaPredicted RBP6.58□□□□□ -1.36
SCAF11-210ENST00000547654 OR14I1A6ND48 311 aa6.57□□□□□ -1.36
SCAF11-210ENST00000547654 UPK3BL1B0FP48 263 aa6.57□□□□□ -1.36
SCAF11-210ENST00000547654 UPK3BL2E5RIL1 263 aa6.57□□□□□ -1.36
SCAF11-210ENST00000547654 LRRN2O75325 713 aa6.57□□□□□ -1.36
SCAF11-210ENST00000547654 TEKQ02763 1124 aa6.57□□□□□ -1.36
SCAF11-210ENST00000547654 SLFN12Q8IYM2 578 aa6.57□□□□□ -1.36
SCAF11-210ENST00000547654 ASCC2Q9H1I8 757 aaPredicted RBP6.57□□□□□ -1.36
SCAF11-210ENST00000547654 KLHL3Q9UH77 587 aa6.57□□□□□ -1.36
SCAF11-210ENST00000547654 A0A0G2JLL6 359 aaPredicted RBP6.56□□□□□ -1.36
SCAF11-210ENST00000547654 ATE1O95260 518 aa6.56□□□□□ -1.36
SCAF11-210ENST00000547654 GALK1P51570 392 aa6.56□□□□□ -1.36
SCAF11-210ENST00000547654 MPP2Q14168 576 aa6.56□□□□□ -1.36
SCAF11-210ENST00000547654 NFIXQ14938 502 aa6.56□□□□□ -1.36
SCAF11-210ENST00000547654 ADGRF1Q5T601 910 aa6.56□□□□□ -1.36
SCAF11-210ENST00000547654 REC114Q7Z4M0 266 aa6.56□□□□□ -1.36
SCAF11-210ENST00000547654 KREMEN1Q96MU8 473 aa6.56□□□□□ -1.36
SCAF11-210ENST00000547654 KCNC2Q96PR1 638 aa6.56□□□□□ -1.36
SCAF11-210ENST00000547654 GCM1Q9NP62 436 aa6.56□□□□□ -1.36
SCAF11-210ENST00000547654 SHISA3A0PJX4 238 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 UNCXA6NJT0 531 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 PSPNO60542 156 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 FOXD2O60548 495 aaPredicted RBP6.55□□□□□ -1.36
SCAF11-210ENST00000547654 HSP90B1P14625 803 aaKnown RBP6.55□□□□□ -1.36
SCAF11-210ENST00000547654 PI3P19957 117 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 VAMP1P23763 118 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 GBP2P32456 591 aaPredicted RBP6.55□□□□□ -1.36
SCAF11-210ENST00000547654 FAM160A1Q05DH4 1040 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 SSPNQ14714 243 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 SIRT2Q8IXJ6 389 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 PHACTR4Q8IZ21 702 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 GOLM1Q8NBJ4 401 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 BACH2Q9BYV9 841 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 IRAK3Q9Y616 596 aa6.55□□□□□ -1.36
SCAF11-210ENST00000547654 MINDY4BA8MYZ0 360 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 CHURC1-FNTBB4DL54 471 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 USP2O75604 605 aaPredicted RBP6.54□□□□□ -1.36
SCAF11-210ENST00000547654 HTR3BO95264 441 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 RECKO95980 971 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 SYN1P17600 705 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 RPL10P27635 214 aaKnown RBP6.54□□□□□ -1.36
SCAF11-210ENST00000547654 EIF4A3P38919 411 aaKnown RBP6.54□□□□□ -1.36
SCAF11-210ENST00000547654 FANCCQ00597 558 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 PWP1Q13610 501 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 RELL1Q8IUW5 271 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 SIGLEC10Q96LC7 697 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 CCDC74BQ96LY2 380 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 EHMT1Q9H9B1 1298 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 MRS2Q9HD23 443 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 REV1Q9UBZ9 1251 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 ZMYM5Q9UJ78 669 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 ROBO2Q9HCK4 1378 aa6.54□□□□□ -1.36
SCAF11-210ENST00000547654 TRIM13O60858 407 aa6.53□□□□□ -1.36
SCAF11-210ENST00000547654 SASH1O94885 1247 aa6.53□□□□□ -1.36
SCAF11-210ENST00000547654 SRSF3P84103 164 aaKnown RBP6.53□□□□□ -1.36
SCAF11-210ENST00000547654 SLC14A2Q15849 920 aa6.53□□□□□ -1.36
SCAF11-210ENST00000547654 ZNF326Q5BKZ1 582 aaKnown RBP6.53□□□□□ -1.36
SCAF11-210ENST00000547654 RNF111Q6ZNA4 994 aa6.53□□□□□ -1.36
SCAF11-210ENST00000547654 MARCH10Q8NA82 808 aaPredicted RBP6.53□□□□□ -1.36
SCAF11-210ENST00000547654 ZNF296Q8WUU4 475 aaPredicted RBP6.53□□□□□ -1.36
SCAF11-210ENST00000547654 LINC01599Q8WXQ3 324 aa6.53□□□□□ -1.36
SCAF11-210ENST00000547654 SHISA4Q96DD7 197 aa6.53□□□□□ -1.36
SCAF11-210ENST00000547654 EAF1Q96JC9 268 aaPredicted RBP6.53□□□□□ -1.36
SCAF11-210ENST00000547654 SIRT5Q9NXA8 310 aa6.53□□□□□ -1.36
SCAF11-210ENST00000547654 EBF1Q9UH73 591 aa6.53□□□□□ -1.36
SCAF11-210ENST00000547654 SSU72P8A0A1W2PR75 194 aa6.52□□□□□ -1.37
SCAF11-210ENST00000547654 NMIQ13287 307 aaPredicted RBP6.52□□□□□ -1.37
SCAF11-210ENST00000547654 WAPLQ7Z5K2 1190 aa6.52□□□□□ -1.37
SCAF11-210ENST00000547654 NLRX1Q86UT6 975 aa6.52□□□□□ -1.37
SCAF11-210ENST00000547654 METTL16Q86W50 562 aaKnown RBP6.52□□□□□ -1.37
SCAF11-210ENST00000547654 MRRFQ96E11 262 aaKnown RBP6.52□□□□□ -1.37
SCAF11-210ENST00000547654 RTEL1Q9NZ71 1219 aa6.52□□□□□ -1.37
SCAF11-210ENST00000547654 MBD1Q9UIS9 605 aaPredicted RBP6.52□□□□□ -1.37
SCAF11-210ENST00000547654 SLC22A31A6NKX4 558 aa6.51□□□□□ -1.37
SCAF11-210ENST00000547654 HRKO00198 91 aa6.51□□□□□ -1.37
SCAF11-210ENST00000547654 GRIN3BO60391 1043 aa6.51□□□□□ -1.37
SCAF11-210ENST00000547654 CDK11BP21127 795 aaKnown RBP6.51□□□□□ -1.37
SCAF11-210ENST00000547654 AFF3P51826 1226 aaKnown RBP6.51□□□□□ -1.37
SCAF11-210ENST00000547654 RNF4P78317 190 aa6.51□□□□□ -1.37
SCAF11-210ENST00000547654 ERICH6BQ5W0A0 696 aa6.51□□□□□ -1.37
SCAF11-210ENST00000547654 OLFML2BQ68BL8 750 aa6.51□□□□□ -1.37
SCAF11-210ENST00000547654 CEP128Q6ZU80 1094 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms