RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 CATIPQ7Z7H3 387 aa16.13■□□□□ 0.17
PTCH1-213ENST00000546820 PNMA1Q8ND90 353 aa16.13■□□□□ 0.17
PTCH1-213ENST00000546820 CHURC1Q8WUH1 139 aa16.13■□□□□ 0.17
PTCH1-213ENST00000546820 P2RX7Q99572 595 aaKnown RBP16.13■□□□□ 0.17
PTCH1-213ENST00000546820 FEM1BQ9UK73 627 aa16.13■□□□□ 0.17
PTCH1-213ENST00000546820 MTMR7Q9Y216 660 aa16.13■□□□□ 0.17
PTCH1-213ENST00000546820 CCDC69A6NI79 296 aa16.12■□□□□ 0.17
PTCH1-213ENST00000546820 FLOT1O75955 427 aa16.12■□□□□ 0.17
PTCH1-213ENST00000546820 CASTP20810 708 aaKnown RBP16.12■□□□□ 0.17
PTCH1-213ENST00000546820 LIFRP42702 1097 aa16.12■□□□□ 0.17
PTCH1-213ENST00000546820 EXOSC10Q01780 885 aaKnown RBP16.12■□□□□ 0.17
PTCH1-213ENST00000546820 NOM1Q5C9Z4 860 aaKnown RBP16.12■□□□□ 0.17
PTCH1-213ENST00000546820 SYNE3Q6ZMZ3 975 aa16.12■□□□□ 0.17
PTCH1-213ENST00000546820 CYP46A1Q9Y6A2 500 aa16.12■□□□□ 0.17
PTCH1-213ENST00000546820 LOC285556D6RIA3 1793 aa16.11■□□□□ 0.17
PTCH1-213ENST00000546820 DSG3P32926 999 aa16.11■□□□□ 0.17
PTCH1-213ENST00000546820 HERVK_113P62684 666 aa16.11■□□□□ 0.17
PTCH1-213ENST00000546820 IKQ13123 557 aaPredicted RBP16.11■□□□□ 0.17
PTCH1-213ENST00000546820 CCDC96Q2M329 555 aa16.11■□□□□ 0.17
PTCH1-213ENST00000546820 RUFY3Q7L099 469 aa16.11■□□□□ 0.17
PTCH1-213ENST00000546820 FAM160B2Q86V87 743 aa16.11■□□□□ 0.17
PTCH1-213ENST00000546820 PRPF38AQ8NAV1 312 aaKnown RBP16.11■□□□□ 0.17
PTCH1-213ENST00000546820 ZSWIM6Q9HCJ5 1215 aa16.11■□□□□ 0.17
PTCH1-213ENST00000546820 MYPNQ86TC9 1320 aa16.11■□□□□ 0.17
PTCH1-213ENST00000546820 TMEM232C9JQI7 657 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 GPR25O00155 361 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 SH2B2O14492 632 aaPredicted RBP16.1■□□□□ 0.17
PTCH1-213ENST00000546820 FOXN1O15353 648 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 PLA2G6O60733 806 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 FDX1P10109 184 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 PDHBP11177 359 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 RPS6KB1P23443 525 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 GPATCH4Q5T3I0 446 aaKnown RBP16.1■□□□□ 0.17
PTCH1-213ENST00000546820 SAMD1Q6SPF0 538 aaPredicted RBP16.1■□□□□ 0.17
PTCH1-213ENST00000546820 C17orf99Q6UX52 265 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 MB21D1Q8N884 522 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 NUP88Q99567 741 aaPredicted RBP16.1■□□□□ 0.17
PTCH1-213ENST00000546820 SLF1Q9BQI6 1058 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 C22orf23Q9BZE7 217 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 LY9Q9HBG7 655 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 CTDP1Q9Y5B0 961 aaPredicted RBP16.1■□□□□ 0.17
PTCH1-213ENST00000546820 CEP350Q5VT06 3117 aa16.1■□□□□ 0.17
PTCH1-213ENST00000546820 FKTNO75072 461 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 CALM1P0DP23 149 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 CALM2P0DP24 149 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 CALM3P0DP25 149 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 STAT2P52630 851 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 SP3Q02447 781 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 KIF22Q14807 665 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 ARHGEF6Q15052 776 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 ASPRV1Q53RT3 343 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 LBX2Q6XYB7 198 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 KCTD1Q719H9 257 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 CHMP4CQ96CF2 233 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 LRRC2Q9BYS8 371 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 BACH2Q9BYV9 841 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 GPCPD1Q9NPB8 672 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 CPA4Q9UI42 421 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 TSKSQ9UJT2 592 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 PPP1R9AQ9ULJ8 1098 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 RABGAP1Q9Y3P9 1069 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 SLC12A7Q9Y666 1083 aa16.09■□□□□ 0.17
PTCH1-213ENST00000546820 ZBED4O75132 1171 aa16.08■□□□□ 0.16
PTCH1-213ENST00000546820 PARP1P09874 1014 aaKnown RBP16.08■□□□□ 0.16
PTCH1-213ENST00000546820 SNHG28P0DPA3 235 aa16.08■□□□□ 0.16
PTCH1-213ENST00000546820 ZNF543Q08ER8 600 aa16.08■□□□□ 0.16
PTCH1-213ENST00000546820 SGMS1Q86VZ5 419 aa16.08■□□□□ 0.16
PTCH1-213ENST00000546820 FBXL16Q8N461 479 aa16.08■□□□□ 0.16
PTCH1-213ENST00000546820 ANKRD13CQ8N6S4 541 aa16.08■□□□□ 0.16
PTCH1-213ENST00000546820 GPRC5AQ8NFJ5 357 aa16.08■□□□□ 0.16
PTCH1-213ENST00000546820 KIFC2Q96AC6 838 aa16.08■□□□□ 0.16
PTCH1-213ENST00000546820 MAP3K14Q99558 947 aa16.08■□□□□ 0.16
PTCH1-213ENST00000546820 R3HDMLQ9H3Y0 253 aa16.08■□□□□ 0.16
PTCH1-213ENST00000546820 SPDYE16A6NNV3 312 aaPredicted RBP16.07■□□□□ 0.16
PTCH1-213ENST00000546820 HSPA8P11142 646 aaKnown RBP16.07■□□□□ 0.16
PTCH1-213ENST00000546820 CPA1P15085 419 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 KIF5BP33176 963 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 LBX1P52954 281 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 CCNA1P78396 465 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 FAM110CQ1W6H9 321 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 Q6ZUG5 572 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 CCAR1Q8IX12 1150 aaKnown RBP16.07■□□□□ 0.16
PTCH1-213ENST00000546820 CTCFLQ8NI51 663 aaPredicted RBP16.07■□□□□ 0.16
PTCH1-213ENST00000546820 NUP133Q8WUM0 1156 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 IL17RAQ96F46 866 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 ERO1AQ96HE7 468 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 TCEANC2Q96MN5 208 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 PAGR1Q9BTK6 254 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 PDRG1Q9NUG6 133 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 FBXO28Q9NVF7 368 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 RBPJLQ9UBG7 517 aa16.07■□□□□ 0.16
PTCH1-213ENST00000546820 FRMPD2Q68DX3 1309 aaPredicted RBP16.07■□□□□ 0.16
PTCH1-213ENST00000546820 ADGRA2Q96PE1 1338 aa16.06■□□□□ 0.16
PTCH1-213ENST00000546820 VWA5AO00534 786 aa16.06■□□□□ 0.16
PTCH1-213ENST00000546820 DDAH1O94760 285 aa16.06■□□□□ 0.16
PTCH1-213ENST00000546820 BCRP11274 1271 aa16.06■□□□□ 0.16
PTCH1-213ENST00000546820 RBM25P49756 843 aaKnown RBP16.06■□□□□ 0.16
PTCH1-213ENST00000546820 TROAPQ12815 778 aa16.06■□□□□ 0.16
PTCH1-213ENST00000546820 BTNL9Q6UXG8 535 aa16.06■□□□□ 0.16
PTCH1-213ENST00000546820 ZNF654Q8IZM8 581 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms