RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 WDR66Q8TBY9 1149 aa10.04□□□□□ -0.8
VPS29-203ENST00000546588 SEC62Q99442 399 aaKnown RBP10.04□□□□□ -0.8
VPS29-203ENST00000546588 PUS7LQ9H0K6 701 aaKnown RBP10.04□□□□□ -0.8
VPS29-203ENST00000546588 CD209Q9NNX6 404 aa10.04□□□□□ -0.8
VPS29-203ENST00000546588 WWC3Q9ULE0 1092 aa10.04□□□□□ -0.8
VPS29-203ENST00000546588 PALD1Q9ULE6 856 aa10.04□□□□□ -0.8
VPS29-203ENST00000546588 MAP4K5Q9Y4K4 846 aa10.04□□□□□ -0.8
VPS29-203ENST00000546588 M0R2C6 588 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 DKK1O94907 266 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 CHGBP05060 677 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 GNAT2P19087 354 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 C6orf118Q5T5N4 469 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 SLC9C2Q5TAH2 1124 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 SOGA3Q5TF21 947 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 CERS3Q8IU89 383 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 TBC1D22AQ8WUA7 517 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 NSUN4Q96CB9 384 aaKnown RBP10.03□□□□□ -0.8
VPS29-203ENST00000546588 TTC14Q96N46 770 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 EYA3Q99504 573 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 RIOK1Q9BRS2 568 aaKnown RBP10.03□□□□□ -0.8
VPS29-203ENST00000546588 MKNK1Q9BUB5 465 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 CXXC1Q9P0U4 656 aaPredicted RBP10.03□□□□□ -0.8
VPS29-203ENST00000546588 NSFL1CQ9UNZ2 370 aaKnown RBP10.03□□□□□ -0.8
VPS29-203ENST00000546588 RBM8AQ9Y5S9 174 aaKnown RBP10.03□□□□□ -0.8
VPS29-203ENST00000546588 SNX14Q9Y5W7 946 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 ZNF532Q9HCE3 1301 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 LTBP3Q9NS15 1303 aa10.03□□□□□ -0.8
VPS29-203ENST00000546588 MYH15Q9Y2K3 1946 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 UNCXA6NJT0 531 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 H3BRB1 525 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 GPAA1O43292 621 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 POLD1P28340 1107 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 NT5C2P49902 561 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 KIAA2012Q0VF49 1180 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 KCNMA1Q12791 1236 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 KRT32Q14532 448 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 CREB3L3Q68CJ9 461 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 SPTY2D1Q68D10 685 aaPredicted RBP10.02□□□□□ -0.81
VPS29-203ENST00000546588 GIMAP6Q6P9H5 292 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 DPP8Q6V1X1 898 aaPredicted RBP10.02□□□□□ -0.81
VPS29-203ENST00000546588 DNAJC14Q6Y2X3 702 aaPredicted RBP10.02□□□□□ -0.81
VPS29-203ENST00000546588 PODNQ7Z5L7 613 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 VPS37DQ86XT2 251 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 TRMT44Q8IYL2 757 aaKnown RBP10.02□□□□□ -0.81
VPS29-203ENST00000546588 SUPT20HQ8NEM7 779 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 STRBPQ96SI9 672 aaKnown RBP10.02□□□□□ -0.81
VPS29-203ENST00000546588 TUT1Q9H6E5 874 aaKnown RBP10.02□□□□□ -0.81
VPS29-203ENST00000546588 DNMT3LQ9UJW3 386 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 PCDHGA11Q9Y5H2 935 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 GAKO14976 1311 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 WDR19Q8NEZ3 1342 aa10.02□□□□□ -0.81
VPS29-203ENST00000546588 SLC27A2O14975 620 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 IDH1O75874 414 aaKnown RBP10.01□□□□□ -0.81
VPS29-203ENST00000546588 CYP21A2P08686 494 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 CHRNA5P30532 468 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 DDIT3P35638 169 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 MCM2P49736 904 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 BECN1Q14457 450 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 OCLNQ16625 522 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 RTKN2Q8IZC4 609 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 TTLL6Q8N841 843 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 C1orf216Q8TAB5 229 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 MRIQ9BWK5 157 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 AGXT2Q9BYV1 514 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 ROBO3Q96MS0 1386 aa10.01□□□□□ -0.81
VPS29-203ENST00000546588 COL2A1P02458 1487 aaPredicted RBP10□□□□□ -0.81
VPS29-203ENST00000546588 MYCP01106 439 aaPredicted RBP10□□□□□ -0.81
VPS29-203ENST00000546588 ZKSCAN1P17029 563 aaPredicted RBP10□□□□□ -0.81
VPS29-203ENST00000546588 ERCC3P19447 782 aa10□□□□□ -0.81
VPS29-203ENST00000546588 R3HDM1Q15032 1099 aaKnown RBP10□□□□□ -0.81
VPS29-203ENST00000546588 CCDC93Q567U6 631 aa10□□□□□ -0.81
VPS29-203ENST00000546588 VPS53Q5VIR6 699 aa10□□□□□ -0.81
VPS29-203ENST00000546588 CCDC129Q6ZRS4 1044 aa10□□□□□ -0.81
VPS29-203ENST00000546588 ADGRA1Q86SQ6 560 aa10□□□□□ -0.81
VPS29-203ENST00000546588 GLYCTKQ8IVS8 523 aa10□□□□□ -0.81
VPS29-203ENST00000546588 MAGEB6Q8N7X4 407 aa10□□□□□ -0.81
VPS29-203ENST00000546588 TSEN2Q8NCE0 465 aaKnown RBP10□□□□□ -0.81
VPS29-203ENST00000546588 CTNNA3Q9UI47 895 aa10□□□□□ -0.81
VPS29-203ENST00000546588 ANAPC4Q9UJX5 808 aa10□□□□□ -0.81
VPS29-203ENST00000546588 RBM47A0AV96 593 aaKnown RBP9.99□□□□□ -0.81
VPS29-203ENST00000546588 K7ELQ4 463 aaPredicted RBP9.99□□□□□ -0.81
VPS29-203ENST00000546588 ZBTB7AO95365 584 aa9.99□□□□□ -0.81
VPS29-203ENST00000546588 FGRP09769 529 aa9.99□□□□□ -0.81
VPS29-203ENST00000546588 BMP2P12643 396 aa9.99□□□□□ -0.81
VPS29-203ENST00000546588 DPEP1P16444 411 aa9.99□□□□□ -0.81
VPS29-203ENST00000546588 PRDX5P30044 214 aa9.99□□□□□ -0.81
VPS29-203ENST00000546588 KRT76Q01546 638 aa9.99□□□□□ -0.81
VPS29-203ENST00000546588 MECOMQ03112 1051 aa9.99□□□□□ -0.81
VPS29-203ENST00000546588 ZNF622Q969S3 477 aaKnown RBP eCLIP9.99□□□□□ -0.81
VPS29-203ENST00000546588 MTA3Q9BTC8 594 aa9.99□□□□□ -0.81
VPS29-203ENST00000546588 TMX4Q9H1E5 349 aaPredicted RBP9.99□□□□□ -0.81
VPS29-203ENST00000546588 EPB41L4AQ9HCS5 686 aaPredicted RBP9.99□□□□□ -0.81
VPS29-203ENST00000546588 LRP2BPQ9P2M1 347 aa9.99□□□□□ -0.81
VPS29-203ENST00000546588 GPR75-ASB3A0A0A6YYF3 556 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 GSG1L2A8MUP6 293 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 FGAP02671 866 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 PCP11498 1178 aaKnown RBP9.98□□□□□ -0.81
VPS29-203ENST00000546588 PSMA5P28066 241 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 EVCP57679 992 aa9.98□□□□□ -0.81
VPS29-203ENST00000546588 GSTO1P78417 241 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms