RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 MECOMQ03112 1051 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 PDE4BQ07343 736 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 PPARAQ07869 468 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 APOBRQ0VD83 1088 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 SF3B2Q13435 895 aaKnown RBP7.22□□□□□ -1.25
SYNE1-239ENST00000545694 NR6A1Q15406 480 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 ZNF827Q17R98 1081 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 SLFNL1Q499Z3 407 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 IQCA1Q86XH1 822 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 CCDC125Q86Z20 511 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 NECAB1Q8N987 351 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 NSUN7Q8NE18 718 aaKnown RBP7.22□□□□□ -1.25
SYNE1-239ENST00000545694 TBC1D16Q8TBP0 767 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 IGDCC4Q8TDY8 1250 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 GPKOWQ92917 476 aaPredicted RBP eCLIP7.22□□□□□ -1.25
SYNE1-239ENST00000545694 AGBL1Q96MI9 1066 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 KCTD15Q96SI1 283 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-239ENST00000545694 EPB41L4AQ9HCS5 686 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-239ENST00000545694 CD209Q9NNX6 404 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 PGPEP1Q9NXJ5 209 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 STK32BQ9NY57 414 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 NSFL1CQ9UNZ2 370 aaKnown RBP7.22□□□□□ -1.25
SYNE1-239ENST00000545694 STK36Q9NRP7 1315 aa7.22□□□□□ -1.25
SYNE1-239ENST00000545694 NAV1Q8NEY1 1877 aa7.21□□□□□ -1.25
SYNE1-239ENST00000545694 MYH1P12882 1939 aa7.21□□□□□ -1.25
SYNE1-239ENST00000545694 KLF18A0A0U1RQI7 1052 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 FSD2A1L4K1 749 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 PTPDC1A2A3K4 754 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 VPS37CA5D8V6 355 aaPredicted RBP7.21□□□□□ -1.26
SYNE1-239ENST00000545694 CCDC69A6NI79 296 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 GOLGA8BA8MQT2 603 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 ZBTB43O43298 467 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 MMP10P09238 476 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 BAG6P46379 1132 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 METAP2P50579 478 aaKnown RBP eCLIP7.21□□□□□ -1.26
SYNE1-239ENST00000545694 ANTXR2P58335 489 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 GPSM2P81274 684 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 WTAPQ15007 396 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 SLC15A2Q16348 729 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 TMEM67Q5HYA8 995 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 PDXDC2PQ6P474 469 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 SMIM5Q71RC9 77 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 BRAPQ7Z569 592 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 TBC1D10CQ8IV04 446 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 FAM177A1Q8N128 213 aaPredicted RBP7.21□□□□□ -1.26
SYNE1-239ENST00000545694 PROCA1Q8NCQ7 364 aaPredicted RBP7.21□□□□□ -1.26
SYNE1-239ENST00000545694 CNKSR1Q969H4 720 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 TCEANC2Q96MN5 208 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 ZNF396Q96N95 335 aaPredicted RBP7.21□□□□□ -1.26
SYNE1-239ENST00000545694 CNTNAP3BQ96NU0 1288 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 CAMKK2Q96RR4 588 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 UBAC1Q9BSL1 405 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 MRIQ9BWK5 157 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 CNTNAP3Q9BZ76 1288 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 ZC3H12CQ9C0D7 883 aaKnown RBP7.21□□□□□ -1.26
SYNE1-239ENST00000545694 ZSWIM5Q9P217 1185 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 FKBPLQ9UIM3 349 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 SLC12A7Q9Y666 1083 aa7.21□□□□□ -1.26
SYNE1-239ENST00000545694 ROBO3Q96MS0 1386 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 GPR75-ASB3A0A0A6YYF3 556 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 B4E1Z4 1266 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 H0YIN7 160 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 IFIT3O14879 490 aaKnown RBP7.2□□□□□ -1.26
SYNE1-239ENST00000545694 CHAF1AQ13111 956 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-239ENST00000545694 STK3Q13188 491 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 APOA5Q6Q788 366 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 NFXL1Q6ZNB6 911 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 Q6ZVU0 165 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 PODNQ7Z5L7 613 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 ZBTB33Q86T24 672 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 USP48Q86UV5 1035 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 TRIM22Q8IYM9 498 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 MIGA1Q8NAN2 632 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 SUPT20HQ8NEM7 779 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 MAP3K14Q99558 947 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 LRRC2Q9BYS8 371 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 VPS33BQ9H267 617 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 LY9Q9HBG7 655 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 DCP1AQ9NPI6 582 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-239ENST00000545694 RBM28Q9NW13 759 aaKnown RBP7.2□□□□□ -1.26
SYNE1-239ENST00000545694 IQSEC3Q9UPP2 1182 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-239ENST00000545694 MYH8P13535 1937 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 COL11A2P13942 1736 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-239ENST00000545694 MROH7-TTC4A0A0A0MT08 1334 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 GAKO14976 1311 aa7.2□□□□□ -1.26
SYNE1-239ENST00000545694 SPINT1O43278 529 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 DDAH1O94760 285 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 CTDNEP1O95476 244 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 IFNAR1P17181 557 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 XBP1P17861 261 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 KLRK1P26718 216 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 PRDX5P30044 214 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 IARSP41252 1262 aaKnown RBP7.19□□□□□ -1.26
SYNE1-239ENST00000545694 HDLBPQ00341 1268 aaKnown RBP7.19□□□□□ -1.26
SYNE1-239ENST00000545694 RELBQ01201 579 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 TRIM29Q14134 588 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 CTR9Q6PD62 1173 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 DPP8Q6V1X1 898 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-239ENST00000545694 CYB5R4Q7L1T6 521 aa7.19□□□□□ -1.26
SYNE1-239ENST00000545694 ADGRA1Q86SQ6 560 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms