RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 CATIPQ7Z7H3 387 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 LRRC47Q8N1G4 583 aaKnown RBP13.76□□□□□ -0.21
SNHG1-221ENST00000544983 NKX2-3Q8TAU0 364 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 ZIC5Q96T25 663 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 ALDH8A1Q9H2A2 487 aaPredicted RBP13.76□□□□□ -0.21
SNHG1-221ENST00000544983 LY9Q9HBG7 655 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 HOXC10Q9NYD6 342 aa13.76□□□□□ -0.21
SNHG1-221ENST00000544983 CCDC69A6NI79 296 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 IGF2BP3O00425 579 aaKnown RBP eCLIP13.75□□□□□ -0.21
SNHG1-221ENST00000544983 SNHG28P0DPA3 235 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 FDX1P10109 184 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 BMP3P12645 472 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 GCLCP48506 637 aaPredicted RBP13.75□□□□□ -0.21
SNHG1-221ENST00000544983 COG2Q14746 738 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 PPP2R5BQ15173 497 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 ANKRD1Q15327 319 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 SYNE3Q6ZMZ3 975 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 CATSPERGQ6ZRH7 1159 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 FAM43AQ8N2R8 423 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 CHURC1Q8WUH1 139 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 TBC1D32Q96NH3 1257 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 AGXT2Q9BYV1 514 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 RPAP3Q9H6T3 665 aaPredicted RBP13.75□□□□□ -0.21
SNHG1-221ENST00000544983 ZFYVE28Q9HCC9 887 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 WBP1LQ9NX94 342 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 FEM1BQ9UK73 627 aa13.75□□□□□ -0.21
SNHG1-221ENST00000544983 RAD21O60216 631 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 DDAH1O94760 285 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 PDHBP11177 359 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 TAF1CQ15572 869 aaPredicted RBP13.74□□□□□ -0.21
SNHG1-221ENST00000544983 ASPRV1Q53RT3 343 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 NOM1Q5C9Z4 860 aaKnown RBP13.74□□□□□ -0.21
SNHG1-221ENST00000544983 TREML2Q5T2D2 321 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 LBX2Q6XYB7 198 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 NFXL1Q6ZNB6 911 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 CHST3Q7LGC8 479 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 FAM160B2Q86V87 743 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 SPICE1Q8N0Z3 855 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 MB21D1Q8N884 522 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 PRPF38AQ8NAV1 312 aaKnown RBP13.74□□□□□ -0.21
SNHG1-221ENST00000544983 TANGO6Q9C0B7 1094 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 ASCC2Q9H1I8 757 aaPredicted RBP13.74□□□□□ -0.21
SNHG1-221ENST00000544983 SLC12A7Q9Y666 1083 aa13.74□□□□□ -0.21
SNHG1-221ENST00000544983 KIF5BP33176 963 aa13.73□□□□□ -0.21
SNHG1-221ENST00000544983 STAT2P52630 851 aa13.73□□□□□ -0.21
SNHG1-221ENST00000544983 EVCP57679 992 aa13.73□□□□□ -0.21
SNHG1-221ENST00000544983 TROAPQ12815 778 aa13.73□□□□□ -0.21
SNHG1-221ENST00000544983 RABEP1Q15276 862 aa13.73□□□□□ -0.21
SNHG1-221ENST00000544983 KIAA1755Q5JYT7 1200 aa13.73□□□□□ -0.21
SNHG1-221ENST00000544983 FAM83BQ5T0W9 1011 aa13.73□□□□□ -0.21
SNHG1-221ENST00000544983 SMCR8Q8TEV9 937 aaPredicted RBP13.73□□□□□ -0.21
SNHG1-221ENST00000544983 PDRG1Q9NUG6 133 aa13.73□□□□□ -0.21
SNHG1-221ENST00000544983 RNF186Q9NXI6 227 aa13.73□□□□□ -0.21
SNHG1-221ENST00000544983 TLR2O60603 784 aa13.72□□□□□ -0.21
SNHG1-221ENST00000544983 FLOT1O75955 427 aa13.72□□□□□ -0.21
SNHG1-221ENST00000544983 PARP1P09874 1014 aaKnown RBP13.72□□□□□ -0.21
SNHG1-221ENST00000544983 GNAQP50148 359 aa13.72□□□□□ -0.21
SNHG1-221ENST00000544983 ZNF543Q08ER8 600 aa13.72□□□□□ -0.21
SNHG1-221ENST00000544983 BTNL9Q6UXG8 535 aa13.72□□□□□ -0.21
SNHG1-221ENST00000544983 Q6ZUG5 572 aa13.72□□□□□ -0.21
SNHG1-221ENST00000544983 ZNF654Q8IZM8 581 aa13.72□□□□□ -0.21
SNHG1-221ENST00000544983 CTCFLQ8NI51 663 aaPredicted RBP13.72□□□□□ -0.21
SNHG1-221ENST00000544983 SLF1Q9BQI6 1058 aa13.72□□□□□ -0.21
SNHG1-221ENST00000544983 LZTS2Q9BRK4 669 aa13.72□□□□□ -0.21
SNHG1-221ENST00000544983 UPF3BQ9BZI7 483 aaKnown RBP13.72□□□□□ -0.21
SNHG1-221ENST00000544983 PNMA2Q9UL42 364 aa13.72□□□□□ -0.21
SNHG1-221ENST00000544983 CCDC196A0A1B0GTZ2 297 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 TRPA1O75762 1119 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 SMARCA1P28370 1054 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 DSG3P32926 999 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 NEK4P51957 841 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 HERVK_113P62684 666 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 CCDC96Q2M329 555 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 APOA5Q6Q788 366 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 CHMP4CQ96CF2 233 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 P2RX7Q99572 595 aaKnown RBP13.71□□□□□ -0.21
SNHG1-221ENST00000544983 LRRC2Q9BYS8 371 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 PPP1R9AQ9ULJ8 1098 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 ADAMTS5Q9UNA0 930 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 RABGAP1Q9Y3P9 1069 aa13.71□□□□□ -0.21
SNHG1-221ENST00000544983 PALM3A6NDB9 673 aaPredicted RBP13.7□□□□□ -0.22
SNHG1-221ENST00000544983 TMEM232C9JQI7 657 aa13.7□□□□□ -0.22
SNHG1-221ENST00000544983 ZBTB43O43298 467 aa13.7□□□□□ -0.22
SNHG1-221ENST00000544983 CPA1P15085 419 aa13.7□□□□□ -0.22
SNHG1-221ENST00000544983 IKQ13123 557 aaPredicted RBP13.7□□□□□ -0.22
SNHG1-221ENST00000544983 CRHR2Q13324 411 aa13.7□□□□□ -0.22
SNHG1-221ENST00000544983 DGKZQ13574 1117 aa13.7□□□□□ -0.22
SNHG1-221ENST00000544983 COL9A3Q14050 684 aaPredicted RBP13.7□□□□□ -0.22
SNHG1-221ENST00000544983 GRM4Q14833 912 aa13.7□□□□□ -0.22
SNHG1-221ENST00000544983 FANCBQ8NB91 859 aa13.7□□□□□ -0.22
SNHG1-221ENST00000544983 BRF1Q92994 677 aa13.7□□□□□ -0.22
SNHG1-221ENST00000544983 ZNF274Q96GC6 653 aaPredicted RBP13.7□□□□□ -0.22
SNHG1-221ENST00000544983 TCEANC2Q96MN5 208 aa13.7□□□□□ -0.22
SNHG1-221ENST00000544983 KIF2CQ99661 725 aa13.7□□□□□ -0.22
SNHG1-221ENST00000544983 RBM28Q9NW13 759 aaKnown RBP13.7□□□□□ -0.22
SNHG1-221ENST00000544983 ISY1Q9ULR0 285 aaKnown RBP13.7□□□□□ -0.22
SNHG1-221ENST00000544983 ADGRA2Q96PE1 1338 aa13.69□□□□□ -0.22
SNHG1-221ENST00000544983 KLF18A0A0U1RQI7 1052 aa13.69□□□□□ -0.22
SNHG1-221ENST00000544983 SPDYE16A6NNV3 312 aaPredicted RBP13.69□□□□□ -0.22
SNHG1-221ENST00000544983 ST18O60284 1047 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms